Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2905

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2903 and Pf6N2E2_2904 are separated by 44 nucleotidesPf6N2E2_2904 and Pf6N2E2_2905 are separated by 34 nucleotidesPf6N2E2_2905 and Pf6N2E2_2906 are separated by 189 nucleotides Pf6N2E2_2903 - Heme oxygenase HemO, associated with heme uptake, at 3,394,618 to 3,395,208 _2903 Pf6N2E2_2904 - Hypothetical protein DUF454, at 3,395,253 to 3,395,693 _2904 Pf6N2E2_2905 - CoA transferase, CAIB/BAIF family, at 3,395,728 to 3,397,074 _2905 Pf6N2E2_2906 - Arginine/ornithine antiporter ArcD, at 3,397,264 to 3,398,691 _2906 Position (kb) 3395 3396 3397 3398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3394.789 kb on + strand, within Pf6N2E2_2903at 3394.789 kb on + strand, within Pf6N2E2_2903at 3394.790 kb on - strand, within Pf6N2E2_2903at 3394.790 kb on - strand, within Pf6N2E2_2903at 3394.790 kb on - strand, within Pf6N2E2_2903at 3394.790 kb on - strand, within Pf6N2E2_2903at 3395.166 kb on + strandat 3395.167 kb on - strandat 3395.189 kb on - strandat 3395.189 kb on - strandat 3395.301 kb on + strand, within Pf6N2E2_2904at 3395.566 kb on - strand, within Pf6N2E2_2904at 3395.566 kb on - strand, within Pf6N2E2_2904at 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.696 kb on + strandat 3395.697 kb on - strandat 3395.697 kb on - strandat 3395.697 kb on - strandat 3395.697 kb on - strandat 3395.697 kb on - strandat 3395.712 kb on + strandat 3395.712 kb on + strandat 3396.010 kb on + strand, within Pf6N2E2_2905at 3396.010 kb on + strand, within Pf6N2E2_2905at 3396.011 kb on - strand, within Pf6N2E2_2905at 3396.551 kb on - strand, within Pf6N2E2_2905at 3396.917 kb on + strand, within Pf6N2E2_2905at 3396.918 kb on - strand, within Pf6N2E2_2905at 3397.159 kb on + strandat 3397.159 kb on + strandat 3397.160 kb on - strandat 3397.286 kb on + strandat 3397.286 kb on + strandat 3397.287 kb on - strandat 3397.287 kb on - strandat 3397.287 kb on - strandat 3397.287 kb on - strandat 3397.287 kb on - strandat 3397.287 kb on - strandat 3397.296 kb on - strandat 3397.296 kb on - strandat 3397.412 kb on + strand, within Pf6N2E2_2906at 3397.412 kb on + strand, within Pf6N2E2_2906at 3397.412 kb on + strand, within Pf6N2E2_2906at 3397.413 kb on - strand, within Pf6N2E2_2906at 3397.413 kb on - strand, within Pf6N2E2_2906at 3397.436 kb on + strand, within Pf6N2E2_2906at 3397.436 kb on + strand, within Pf6N2E2_2906at 3397.436 kb on + strand, within Pf6N2E2_2906at 3397.437 kb on - strand, within Pf6N2E2_2906at 3397.454 kb on + strand, within Pf6N2E2_2906at 3397.455 kb on - strand, within Pf6N2E2_2906at 3397.455 kb on - strand, within Pf6N2E2_2906at 3397.472 kb on + strand, within Pf6N2E2_2906at 3397.473 kb on - strand, within Pf6N2E2_2906at 3397.532 kb on + strand, within Pf6N2E2_2906at 3397.532 kb on + strand, within Pf6N2E2_2906at 3397.532 kb on + strand, within Pf6N2E2_2906at 3397.532 kb on + strand, within Pf6N2E2_2906at 3397.533 kb on - strand, within Pf6N2E2_2906at 3397.566 kb on - strand, within Pf6N2E2_2906at 3397.583 kb on + strand, within Pf6N2E2_2906at 3397.584 kb on - strand, within Pf6N2E2_2906at 3397.584 kb on - strand, within Pf6N2E2_2906at 3397.584 kb on - strand, within Pf6N2E2_2906at 3397.613 kb on + strand, within Pf6N2E2_2906at 3397.613 kb on + strand, within Pf6N2E2_2906at 3397.613 kb on + strand, within Pf6N2E2_2906at 3397.614 kb on - strand, within Pf6N2E2_2906at 3397.614 kb on - strand, within Pf6N2E2_2906at 3397.628 kb on + strand, within Pf6N2E2_2906at 3397.628 kb on + strand, within Pf6N2E2_2906at 3397.628 kb on + strand, within Pf6N2E2_2906at 3397.628 kb on + strand, within Pf6N2E2_2906at 3397.629 kb on - strand, within Pf6N2E2_2906at 3397.629 kb on - strand, within Pf6N2E2_2906at 3397.629 kb on - strand, within Pf6N2E2_2906at 3397.629 kb on - strand, within Pf6N2E2_2906at 3397.629 kb on - strand, within Pf6N2E2_2906at 3398.002 kb on + strand, within Pf6N2E2_2906at 3398.002 kb on + strand, within Pf6N2E2_2906at 3398.002 kb on + strand, within Pf6N2E2_2906at 3398.003 kb on - strand, within Pf6N2E2_2906at 3398.003 kb on - strand, within Pf6N2E2_2906at 3398.033 kb on + strand, within Pf6N2E2_2906at 3398.033 kb on + strand, within Pf6N2E2_2906at 3398.034 kb on - strand, within Pf6N2E2_2906at 3398.034 kb on - strand, within Pf6N2E2_2906

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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3,394,789 + Pf6N2E2_2903 0.29 +0.7
3,394,789 + Pf6N2E2_2903 0.29 -1.6
3,394,790 - Pf6N2E2_2903 0.29 +0.1
3,394,790 - Pf6N2E2_2903 0.29 +1.0
3,394,790 - Pf6N2E2_2903 0.29 -0.0
3,394,790 - Pf6N2E2_2903 0.29 -0.8
3,395,166 + -0.4
3,395,167 - -0.0
3,395,189 - -2.4
3,395,189 - +0.3
3,395,301 + Pf6N2E2_2904 0.11 +0.1
3,395,566 - Pf6N2E2_2904 0.71 -1.5
3,395,566 - Pf6N2E2_2904 0.71 +1.0
3,395,696 + +1.3
3,395,696 + +0.6
3,395,696 + -0.0
3,395,696 + +0.5
3,395,696 + +1.1
3,395,696 + +0.1
3,395,696 + +0.0
3,395,696 + +0.6
3,395,696 + +1.8
3,395,697 - +0.7
3,395,697 - -3.0
3,395,697 - +1.4
3,395,697 - +0.1
3,395,697 - +0.3
3,395,712 + +0.4
3,395,712 + +1.7
3,396,010 + Pf6N2E2_2905 0.21 -1.2
3,396,010 + Pf6N2E2_2905 0.21 -0.8
3,396,011 - Pf6N2E2_2905 0.21 -0.9
3,396,551 - Pf6N2E2_2905 0.61 -1.1
3,396,917 + Pf6N2E2_2905 0.88 +0.1
3,396,918 - Pf6N2E2_2905 0.88 -1.4
3,397,159 + -0.5
3,397,159 + -0.4
3,397,160 - -1.3
3,397,286 + +0.9
3,397,286 + -1.8
3,397,287 - -0.5
3,397,287 - +1.3
3,397,287 - -0.9
3,397,287 - -0.4
3,397,287 - -0.2
3,397,287 - +0.6
3,397,296 - +0.1
3,397,296 - +0.4
3,397,412 + Pf6N2E2_2906 0.10 -2.1
3,397,412 + Pf6N2E2_2906 0.10 +0.8
3,397,412 + Pf6N2E2_2906 0.10 +0.8
3,397,413 - Pf6N2E2_2906 0.10 -0.3
3,397,413 - Pf6N2E2_2906 0.10 +2.3
3,397,436 + Pf6N2E2_2906 0.12 +1.3
3,397,436 + Pf6N2E2_2906 0.12 +0.3
3,397,436 + Pf6N2E2_2906 0.12 -0.3
3,397,437 - Pf6N2E2_2906 0.12 +0.5
3,397,454 + Pf6N2E2_2906 0.13 -2.0
3,397,455 - Pf6N2E2_2906 0.13 +0.1
3,397,455 - Pf6N2E2_2906 0.13 +0.3
3,397,472 + Pf6N2E2_2906 0.15 +1.2
3,397,473 - Pf6N2E2_2906 0.15 +0.9
3,397,532 + Pf6N2E2_2906 0.19 +0.9
3,397,532 + Pf6N2E2_2906 0.19 +0.9
3,397,532 + Pf6N2E2_2906 0.19 +0.5
3,397,532 + Pf6N2E2_2906 0.19 -0.3
3,397,533 - Pf6N2E2_2906 0.19 -0.8
3,397,566 - Pf6N2E2_2906 0.21 +0.2
3,397,583 + Pf6N2E2_2906 0.22 +0.4
3,397,584 - Pf6N2E2_2906 0.22 -1.9
3,397,584 - Pf6N2E2_2906 0.22 -0.6
3,397,584 - Pf6N2E2_2906 0.22 +0.4
3,397,613 + Pf6N2E2_2906 0.24 +0.1
3,397,613 + Pf6N2E2_2906 0.24 +0.3
3,397,613 + Pf6N2E2_2906 0.24 -0.2
3,397,614 - Pf6N2E2_2906 0.25 +1.2
3,397,614 - Pf6N2E2_2906 0.25 +2.5
3,397,628 + Pf6N2E2_2906 0.25 +2.3
3,397,628 + Pf6N2E2_2906 0.25 -0.9
3,397,628 + Pf6N2E2_2906 0.25 -0.1
3,397,628 + Pf6N2E2_2906 0.25 +1.7
3,397,629 - Pf6N2E2_2906 0.26 +0.6
3,397,629 - Pf6N2E2_2906 0.26 -0.6
3,397,629 - Pf6N2E2_2906 0.26 +0.3
3,397,629 - Pf6N2E2_2906 0.26 +0.6
3,397,629 - Pf6N2E2_2906 0.26 +0.1
3,398,002 + Pf6N2E2_2906 0.52 +0.7
3,398,002 + Pf6N2E2_2906 0.52 +0.9
3,398,002 + Pf6N2E2_2906 0.52 -0.4
3,398,003 - Pf6N2E2_2906 0.52 -0.4
3,398,003 - Pf6N2E2_2906 0.52 -0.7
3,398,033 + Pf6N2E2_2906 0.54 -0.7
3,398,033 + Pf6N2E2_2906 0.54 -0.4
3,398,034 - Pf6N2E2_2906 0.54 -0.1
3,398,034 - Pf6N2E2_2906 0.54 -2.3

Or see this region's nucleotide sequence