Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2642

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2640 and Pf6N2E2_2641 overlap by 7 nucleotidesPf6N2E2_2641 and Pf6N2E2_2642 are separated by 100 nucleotidesPf6N2E2_2642 and Pf6N2E2_2643 are separated by 139 nucleotides Pf6N2E2_2640 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,101,768 to 3,102,658 _2640 Pf6N2E2_2641 - SelT/selW/selH selenoprotein domain, at 3,102,652 to 3,102,939 _2641 Pf6N2E2_2642 - putative patatin-like phospholipase, at 3,103,040 to 3,105,211 _2642 Pf6N2E2_2643 - Tfp pilus assembly protein FimV, at 3,105,351 to 3,107,309 _2643 Position (kb) 3103 3104 3105 3106Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3102.506 kb on + strand, within Pf6N2E2_2640at 3102.506 kb on + strand, within Pf6N2E2_2640at 3102.771 kb on + strand, within Pf6N2E2_2641at 3102.771 kb on + strand, within Pf6N2E2_2641at 3102.905 kb on + strand, within Pf6N2E2_2641at 3102.905 kb on + strand, within Pf6N2E2_2641at 3102.905 kb on + strand, within Pf6N2E2_2641at 3102.905 kb on + strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.906 kb on - strand, within Pf6N2E2_2641at 3102.927 kb on + strandat 3102.928 kb on - strandat 3102.972 kb on + strandat 3102.972 kb on + strandat 3102.972 kb on + strandat 3102.973 kb on - strandat 3102.973 kb on - strandat 3102.973 kb on - strandat 3102.974 kb on + strandat 3102.974 kb on + strandat 3102.974 kb on + strandat 3102.974 kb on + strandat 3102.974 kb on + strandat 3102.975 kb on - strandat 3102.975 kb on - strandat 3102.975 kb on - strandat 3102.975 kb on - strandat 3102.975 kb on - strandat 3102.978 kb on - strandat 3103.230 kb on + strandat 3103.230 kb on + strandat 3103.230 kb on + strandat 3103.230 kb on + strandat 3103.230 kb on + strandat 3103.231 kb on - strandat 3103.231 kb on - strandat 3103.231 kb on - strandat 3103.231 kb on - strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.232 kb on + strandat 3103.233 kb on - strandat 3103.233 kb on - strandat 3103.233 kb on - strandat 3103.233 kb on - strandat 3103.233 kb on - strandat 3103.244 kb on + strandat 3103.245 kb on - strandat 3103.245 kb on - strandat 3103.245 kb on - strandat 3103.245 kb on - strandat 3103.326 kb on + strand, within Pf6N2E2_2642at 3103.326 kb on + strand, within Pf6N2E2_2642at 3103.327 kb on - strand, within Pf6N2E2_2642at 3103.477 kb on + strand, within Pf6N2E2_2642at 3103.477 kb on + strand, within Pf6N2E2_2642at 3103.478 kb on - strand, within Pf6N2E2_2642at 3103.478 kb on - strand, within Pf6N2E2_2642at 3103.478 kb on - strand, within Pf6N2E2_2642at 3103.478 kb on - strand, within Pf6N2E2_2642at 3103.478 kb on - strand, within Pf6N2E2_2642at 3103.959 kb on + strand, within Pf6N2E2_2642at 3104.084 kb on + strand, within Pf6N2E2_2642at 3104.084 kb on + strand, within Pf6N2E2_2642at 3104.085 kb on - strand, within Pf6N2E2_2642at 3104.085 kb on - strand, within Pf6N2E2_2642at 3104.150 kb on + strand, within Pf6N2E2_2642at 3104.150 kb on + strand, within Pf6N2E2_2642at 3104.150 kb on + strand, within Pf6N2E2_2642at 3104.151 kb on - strand, within Pf6N2E2_2642at 3104.162 kb on + strand, within Pf6N2E2_2642at 3104.162 kb on + strand, within Pf6N2E2_2642at 3104.396 kb on + strand, within Pf6N2E2_2642at 3104.396 kb on + strand, within Pf6N2E2_2642at 3104.396 kb on + strand, within Pf6N2E2_2642at 3104.408 kb on + strand, within Pf6N2E2_2642at 3104.409 kb on - strand, within Pf6N2E2_2642at 3104.409 kb on - strand, within Pf6N2E2_2642at 3104.409 kb on - strand, within Pf6N2E2_2642at 3104.436 kb on - strand, within Pf6N2E2_2642at 3104.436 kb on - strand, within Pf6N2E2_2642at 3104.663 kb on + strand, within Pf6N2E2_2642at 3104.664 kb on - strand, within Pf6N2E2_2642at 3104.702 kb on + strand, within Pf6N2E2_2642at 3104.702 kb on + strand, within Pf6N2E2_2642at 3104.702 kb on + strand, within Pf6N2E2_2642at 3104.703 kb on - strand, within Pf6N2E2_2642at 3104.703 kb on - strand, within Pf6N2E2_2642at 3104.748 kb on - strand, within Pf6N2E2_2642at 3104.748 kb on - strand, within Pf6N2E2_2642at 3104.975 kb on + strand, within Pf6N2E2_2642at 3104.975 kb on + strand, within Pf6N2E2_2642at 3104.976 kb on - strand, within Pf6N2E2_2642at 3105.002 kb on + strandat 3105.026 kb on + strandat 3105.026 kb on + strandat 3105.027 kb on - strandat 3105.027 kb on - strandat 3105.027 kb on - strandat 3105.089 kb on + strandat 3105.089 kb on + strandat 3105.090 kb on - strandat 3105.090 kb on - strandat 3105.124 kb on + strandat 3105.125 kb on - strandat 3105.125 kb on - strandat 3105.152 kb on + strandat 3105.152 kb on + strandat 3105.152 kb on + strandat 3105.153 kb on - strandat 3105.153 kb on - strandat 3105.153 kb on - strandat 3105.153 kb on - strandat 3105.185 kb on + strandat 3105.185 kb on + strandat 3105.185 kb on + strandat 3105.186 kb on - strandat 3105.688 kb on + strand, within Pf6N2E2_2643at 3105.833 kb on + strand, within Pf6N2E2_2643at 3105.834 kb on - strand, within Pf6N2E2_2643at 3105.954 kb on + strand, within Pf6N2E2_2643at 3105.954 kb on + strand, within Pf6N2E2_2643at 3105.954 kb on + strand, within Pf6N2E2_2643at 3105.954 kb on + strand, within Pf6N2E2_2643at 3105.955 kb on - strand, within Pf6N2E2_2643at 3105.955 kb on - strand, within Pf6N2E2_2643at 3105.955 kb on - strand, within Pf6N2E2_2643at 3106.096 kb on + strand, within Pf6N2E2_2643at 3106.097 kb on - strand, within Pf6N2E2_2643at 3106.097 kb on - strand, within Pf6N2E2_2643at 3106.097 kb on - strand, within Pf6N2E2_2643at 3106.105 kb on + strand, within Pf6N2E2_2643at 3106.105 kb on + strand, within Pf6N2E2_2643at 3106.152 kb on - strand, within Pf6N2E2_2643

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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3,102,506 + Pf6N2E2_2640 0.83 +0.9
3,102,506 + Pf6N2E2_2640 0.83 +0.0
3,102,771 + Pf6N2E2_2641 0.41 +0.8
3,102,771 + Pf6N2E2_2641 0.41 -2.4
3,102,905 + Pf6N2E2_2641 0.88 +1.8
3,102,905 + Pf6N2E2_2641 0.88 -0.1
3,102,905 + Pf6N2E2_2641 0.88 -1.1
3,102,905 + Pf6N2E2_2641 0.88 +0.4
3,102,906 - Pf6N2E2_2641 0.88 -0.1
3,102,906 - Pf6N2E2_2641 0.88 +0.6
3,102,906 - Pf6N2E2_2641 0.88 -0.5
3,102,906 - Pf6N2E2_2641 0.88 -0.7
3,102,906 - Pf6N2E2_2641 0.88 -0.8
3,102,906 - Pf6N2E2_2641 0.88 +0.0
3,102,927 + +0.5
3,102,928 - +0.1
3,102,972 + +1.8
3,102,972 + +0.4
3,102,972 + -0.2
3,102,973 - +0.8
3,102,973 - +0.9
3,102,973 - +0.5
3,102,974 + -1.0
3,102,974 + -0.1
3,102,974 + -0.8
3,102,974 + -1.0
3,102,974 + -0.4
3,102,975 - +0.4
3,102,975 - +0.4
3,102,975 - +2.4
3,102,975 - +0.2
3,102,975 - +1.5
3,102,978 - -0.5
3,103,230 + +1.2
3,103,230 + +0.2
3,103,230 + +0.6
3,103,230 + +2.6
3,103,230 + +0.9
3,103,231 - +1.1
3,103,231 - +1.3
3,103,231 - +1.7
3,103,231 - +1.2
3,103,232 + +1.3
3,103,232 + -0.0
3,103,232 + +2.1
3,103,232 + +1.8
3,103,232 + +0.9
3,103,232 + +1.6
3,103,232 + +1.5
3,103,232 + +1.4
3,103,232 + -0.0
3,103,232 + +0.4
3,103,233 - +3.2
3,103,233 - +2.2
3,103,233 - +0.7
3,103,233 - +1.3
3,103,233 - +2.0
3,103,244 + +0.8
3,103,245 - +2.2
3,103,245 - -0.1
3,103,245 - +1.5
3,103,245 - +1.0
3,103,326 + Pf6N2E2_2642 0.13 +1.2
3,103,326 + Pf6N2E2_2642 0.13 -0.1
3,103,327 - Pf6N2E2_2642 0.13 +1.4
3,103,477 + Pf6N2E2_2642 0.20 +3.0
3,103,477 + Pf6N2E2_2642 0.20 +1.2
3,103,478 - Pf6N2E2_2642 0.20 +1.1
3,103,478 - Pf6N2E2_2642 0.20 +2.1
3,103,478 - Pf6N2E2_2642 0.20 +1.5
3,103,478 - Pf6N2E2_2642 0.20 +2.1
3,103,478 - Pf6N2E2_2642 0.20 +2.3
3,103,959 + Pf6N2E2_2642 0.42 +1.4
3,104,084 + Pf6N2E2_2642 0.48 +2.1
3,104,084 + Pf6N2E2_2642 0.48 +2.3
3,104,085 - Pf6N2E2_2642 0.48 +0.5
3,104,085 - Pf6N2E2_2642 0.48 +1.3
3,104,150 + Pf6N2E2_2642 0.51 +0.8
3,104,150 + Pf6N2E2_2642 0.51 +1.8
3,104,150 + Pf6N2E2_2642 0.51 +2.2
3,104,151 - Pf6N2E2_2642 0.51 +0.7
3,104,162 + Pf6N2E2_2642 0.52 +0.7
3,104,162 + Pf6N2E2_2642 0.52 +2.0
3,104,396 + Pf6N2E2_2642 0.62 +2.1
3,104,396 + Pf6N2E2_2642 0.62 +0.6
3,104,396 + Pf6N2E2_2642 0.62 +1.4
3,104,408 + Pf6N2E2_2642 0.63 +2.6
3,104,409 - Pf6N2E2_2642 0.63 +1.2
3,104,409 - Pf6N2E2_2642 0.63 +1.4
3,104,409 - Pf6N2E2_2642 0.63 +1.2
3,104,436 - Pf6N2E2_2642 0.64 +1.2
3,104,436 - Pf6N2E2_2642 0.64 +1.4
3,104,663 + Pf6N2E2_2642 0.75 +1.9
3,104,664 - Pf6N2E2_2642 0.75 +1.6
3,104,702 + Pf6N2E2_2642 0.77 +1.4
3,104,702 + Pf6N2E2_2642 0.77 +2.5
3,104,702 + Pf6N2E2_2642 0.77 +2.1
3,104,703 - Pf6N2E2_2642 0.77 +1.5
3,104,703 - Pf6N2E2_2642 0.77 +1.2
3,104,748 - Pf6N2E2_2642 0.79 +1.9
3,104,748 - Pf6N2E2_2642 0.79 +0.5
3,104,975 + Pf6N2E2_2642 0.89 +1.4
3,104,975 + Pf6N2E2_2642 0.89 +1.2
3,104,976 - Pf6N2E2_2642 0.89 +0.9
3,105,002 + +1.5
3,105,026 + +1.8
3,105,026 + +2.9
3,105,027 - +1.7
3,105,027 - +1.2
3,105,027 - +1.7
3,105,089 + -0.2
3,105,089 + -0.2
3,105,090 - +1.6
3,105,090 - +1.6
3,105,124 + +2.3
3,105,125 - +0.1
3,105,125 - +1.5
3,105,152 + +0.2
3,105,152 + +1.1
3,105,152 + +1.4
3,105,153 - +1.2
3,105,153 - +3.1
3,105,153 - +1.6
3,105,153 - +1.6
3,105,185 + +2.4
3,105,185 + +1.3
3,105,185 + +1.9
3,105,186 - +2.7
3,105,688 + Pf6N2E2_2643 0.17 -1.8
3,105,833 + Pf6N2E2_2643 0.25 -0.5
3,105,834 - Pf6N2E2_2643 0.25 +1.9
3,105,954 + Pf6N2E2_2643 0.31 +0.8
3,105,954 + Pf6N2E2_2643 0.31 +1.1
3,105,954 + Pf6N2E2_2643 0.31 -0.6
3,105,954 + Pf6N2E2_2643 0.31 +0.1
3,105,955 - Pf6N2E2_2643 0.31 -0.3
3,105,955 - Pf6N2E2_2643 0.31 -1.8
3,105,955 - Pf6N2E2_2643 0.31 -0.4
3,106,096 + Pf6N2E2_2643 0.38 -2.1
3,106,097 - Pf6N2E2_2643 0.38 +1.5
3,106,097 - Pf6N2E2_2643 0.38 -0.2
3,106,097 - Pf6N2E2_2643 0.38 -0.1
3,106,105 + Pf6N2E2_2643 0.38 +1.6
3,106,105 + Pf6N2E2_2643 0.38 +1.1
3,106,152 - Pf6N2E2_2643 0.41 -2.4

Or see this region's nucleotide sequence