Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2398 and Pf6N2E2_2399 overlap by 1 nucleotides Pf6N2E2_2399 and Pf6N2E2_2400 overlap by 25 nucleotides Pf6N2E2_2400 and Pf6N2E2_2401 are separated by 152 nucleotides
Pf6N2E2_2398 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 2,837,019 to 2,838,746
_2398
Pf6N2E2_2399 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 2,838,746 to 2,839,615
_2399
Pf6N2E2_2400 - Thiol:disulfide interchange protein DsbG precursor, at 2,839,591 to 2,840,358
_2400
Pf6N2E2_2401 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 2,840,511 to 2,841,323
_2401
Position (kb)
2838
2839
2840 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2838.874 kb on - strand, within Pf6N2E2_2399 at 2838.874 kb on - strand, within Pf6N2E2_2399 at 2839.133 kb on + strand, within Pf6N2E2_2399 at 2839.133 kb on + strand, within Pf6N2E2_2399 at 2839.233 kb on + strand, within Pf6N2E2_2399 at 2839.234 kb on - strand, within Pf6N2E2_2399 at 2839.234 kb on - strand, within Pf6N2E2_2399 at 2839.234 kb on - strand, within Pf6N2E2_2399 at 2839.234 kb on - strand, within Pf6N2E2_2399 at 2839.234 kb on - strand, within Pf6N2E2_2399 at 2839.358 kb on + strand, within Pf6N2E2_2399 at 2839.358 kb on + strand, within Pf6N2E2_2399 at 2839.359 kb on - strand, within Pf6N2E2_2399 at 2839.359 kb on - strand, within Pf6N2E2_2399 at 2839.359 kb on - strand, within Pf6N2E2_2399 at 2839.359 kb on - strand, within Pf6N2E2_2399 at 2839.460 kb on + strand, within Pf6N2E2_2399 at 2839.460 kb on + strand, within Pf6N2E2_2399 at 2839.461 kb on - strand, within Pf6N2E2_2399 at 2839.461 kb on - strand, within Pf6N2E2_2399 at 2839.762 kb on + strand, within Pf6N2E2_2400 at 2839.763 kb on - strand, within Pf6N2E2_2400 at 2839.786 kb on + strand, within Pf6N2E2_2400 at 2839.787 kb on - strand, within Pf6N2E2_2400 at 2839.829 kb on - strand, within Pf6N2E2_2400 at 2839.879 kb on + strand, within Pf6N2E2_2400 at 2839.879 kb on + strand, within Pf6N2E2_2400 at 2839.879 kb on + strand, within Pf6N2E2_2400 at 2839.879 kb on + strand, within Pf6N2E2_2400 at 2839.880 kb on - strand, within Pf6N2E2_2400 at 2839.966 kb on + strand, within Pf6N2E2_2400 at 2839.966 kb on + strand, within Pf6N2E2_2400 at 2840.095 kb on - strand, within Pf6N2E2_2400 at 2840.192 kb on + strand, within Pf6N2E2_2400 at 2840.193 kb on - strand, within Pf6N2E2_2400 at 2840.357 kb on - strand at 2840.491 kb on + strand at 2840.579 kb on + strand at 2840.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 2,838,874 - Pf6N2E2_2399 0.15 -0.2 2,838,874 - Pf6N2E2_2399 0.15 -3.1 2,839,133 + Pf6N2E2_2399 0.44 -0.6 2,839,133 + Pf6N2E2_2399 0.44 -0.2 2,839,233 + Pf6N2E2_2399 0.56 -0.2 2,839,234 - Pf6N2E2_2399 0.56 -0.5 2,839,234 - Pf6N2E2_2399 0.56 -0.9 2,839,234 - Pf6N2E2_2399 0.56 -1.7 2,839,234 - Pf6N2E2_2399 0.56 +0.8 2,839,234 - Pf6N2E2_2399 0.56 -2.3 2,839,358 + Pf6N2E2_2399 0.70 -0.0 2,839,358 + Pf6N2E2_2399 0.70 -2.0 2,839,359 - Pf6N2E2_2399 0.70 -1.0 2,839,359 - Pf6N2E2_2399 0.70 -1.4 2,839,359 - Pf6N2E2_2399 0.70 +0.1 2,839,359 - Pf6N2E2_2399 0.70 -1.4 2,839,460 + Pf6N2E2_2399 0.82 -1.8 2,839,460 + Pf6N2E2_2399 0.82 -0.3 2,839,461 - Pf6N2E2_2399 0.82 -2.5 2,839,461 - Pf6N2E2_2399 0.82 -2.3 2,839,762 + Pf6N2E2_2400 0.22 +0.3 2,839,763 - Pf6N2E2_2400 0.22 +1.7 2,839,786 + Pf6N2E2_2400 0.25 +0.4 2,839,787 - Pf6N2E2_2400 0.26 -0.6 2,839,829 - Pf6N2E2_2400 0.31 +1.5 2,839,879 + Pf6N2E2_2400 0.38 -0.3 2,839,879 + Pf6N2E2_2400 0.38 +0.1 2,839,879 + Pf6N2E2_2400 0.38 +0.7 2,839,879 + Pf6N2E2_2400 0.38 +0.2 2,839,880 - Pf6N2E2_2400 0.38 -2.1 2,839,966 + Pf6N2E2_2400 0.49 -0.6 2,839,966 + Pf6N2E2_2400 0.49 -0.6 2,840,095 - Pf6N2E2_2400 0.66 +1.5 2,840,192 + Pf6N2E2_2400 0.78 +1.1 2,840,193 - Pf6N2E2_2400 0.78 -0.9 2,840,357 - +0.1 2,840,491 + -0.6 2,840,579 + +0.3 2,840,580 - -0.8
Or see this region's nucleotide sequence