Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_150

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_149 and Pf6N2E2_150 are separated by 155 nucleotidesPf6N2E2_150 and Pf6N2E2_151 are separated by 2 nucleotidesPf6N2E2_151 and Pf6N2E2_152 are separated by 24 nucleotidesPf6N2E2_152 and Pf6N2E2_153 are separated by 111 nucleotides Pf6N2E2_149 - Inner membrane component of tripartite multidrug resistance system, at 204,500 to 206,029 _149 Pf6N2E2_150 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 206,185 to 206,934 _150 Pf6N2E2_151 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 206,937 to 207,440 _151 Pf6N2E2_152 - hypothetical protein, at 207,465 to 207,578 _152 Pf6N2E2_153 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 207,690 to 209,390 _153 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1at 205.340 kb on + strand, within Pf6N2E2_149at 205.341 kb on - strand, within Pf6N2E2_149at 205.478 kb on + strand, within Pf6N2E2_149at 205.479 kb on - strand, within Pf6N2E2_149at 205.479 kb on - strand, within Pf6N2E2_149at 205.479 kb on - strand, within Pf6N2E2_149at 205.787 kb on + strand, within Pf6N2E2_149at 205.787 kb on + strand, within Pf6N2E2_149at 205.788 kb on - strand, within Pf6N2E2_149at 205.788 kb on - strand, within Pf6N2E2_149at 205.788 kb on - strand, within Pf6N2E2_149at 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.904 kb on + strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.905 kb on - strandat 205.925 kb on + strandat 205.925 kb on + strandat 205.926 kb on - strandat 205.926 kb on - strandat 205.926 kb on - strandat 205.926 kb on - strandat 205.926 kb on - strandat 207.506 kb on - strand, within Pf6N2E2_152at 207.646 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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205,340 + Pf6N2E2_149 0.55 -1.1
205,341 - Pf6N2E2_149 0.55 -1.5
205,478 + Pf6N2E2_149 0.64 +0.2
205,479 - Pf6N2E2_149 0.64 -0.7
205,479 - Pf6N2E2_149 0.64 -0.2
205,479 - Pf6N2E2_149 0.64 -0.7
205,787 + Pf6N2E2_149 0.84 +0.4
205,787 + Pf6N2E2_149 0.84 -0.5
205,788 - Pf6N2E2_149 0.84 -2.3
205,788 - Pf6N2E2_149 0.84 +0.3
205,788 - Pf6N2E2_149 0.84 +0.7
205,904 + -0.5
205,904 + +0.3
205,904 + +0.2
205,904 + -0.3
205,904 + +0.3
205,904 + -0.8
205,904 + -1.4
205,904 + -0.4
205,904 + +0.4
205,904 + -1.1
205,904 + -1.0
205,904 + +0.9
205,904 + +0.8
205,905 - -1.0
205,905 - -0.9
205,905 - +0.0
205,905 - +1.4
205,905 - -1.3
205,905 - -0.7
205,905 - +0.4
205,905 - -1.8
205,905 - -0.1
205,905 - -1.0
205,905 - -0.1
205,905 - -2.0
205,925 + -1.1
205,925 + +0.5
205,926 - +0.9
205,926 - -0.8
205,926 - +0.5
205,926 - +0.7
205,926 - +0.4
207,506 - Pf6N2E2_152 0.36 -0.8
207,646 + -0.8

Or see this region's nucleotide sequence