Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1292

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1291 and Pf6N2E2_1292 are separated by 377 nucleotidesPf6N2E2_1292 and Pf6N2E2_1293 are separated by 332 nucleotidesPf6N2E2_1293 and Pf6N2E2_1294 are separated by 15 nucleotides Pf6N2E2_1291 - Ferrichrome-iron receptor, at 1,522,828 to 1,524,852 _1291 Pf6N2E2_1292 - Methyl-accepting chemotaxis protein, at 1,525,230 to 1,527,026 _1292 Pf6N2E2_1293 - COG2879, Hypothetical small protein yjiX, at 1,527,359 to 1,527,556 _1293 Pf6N2E2_1294 - Carbon starvation protein A, at 1,527,572 to 1,529,632 _1294 Position (kb) 1525 1526 1527 1528Strain fitness (log2 ratio) -3 -2 -1 0 1at 1524.267 kb on - strand, within Pf6N2E2_1291at 1524.267 kb on - strand, within Pf6N2E2_1291at 1524.464 kb on + strand, within Pf6N2E2_1291at 1524.464 kb on + strand, within Pf6N2E2_1291at 1524.778 kb on - strandat 1524.778 kb on - strandat 1525.040 kb on + strandat 1525.040 kb on + strandat 1525.040 kb on + strandat 1525.040 kb on + strandat 1525.166 kb on - strandat 1525.166 kb on - strandat 1525.241 kb on - strandat 1525.251 kb on + strandat 1525.252 kb on - strandat 1525.252 kb on - strandat 1525.338 kb on + strandat 1525.860 kb on - strand, within Pf6N2E2_1292at 1525.894 kb on - strand, within Pf6N2E2_1292at 1525.933 kb on + strand, within Pf6N2E2_1292at 1525.934 kb on - strand, within Pf6N2E2_1292at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.664 kb on + strand, within Pf6N2E2_1292at 1526.763 kb on + strand, within Pf6N2E2_1292at 1526.911 kb on - strandat 1526.911 kb on - strandat 1526.911 kb on - strandat 1526.950 kb on + strandat 1526.950 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.525 kb on + strand, within Pf6N2E2_1293at 1527.529 kb on + strand, within Pf6N2E2_1293at 1527.529 kb on + strand, within Pf6N2E2_1293

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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1,524,267 - Pf6N2E2_1291 0.71 -0.1
1,524,267 - Pf6N2E2_1291 0.71 -1.2
1,524,464 + Pf6N2E2_1291 0.81 -0.4
1,524,464 + Pf6N2E2_1291 0.81 -1.5
1,524,778 - +1.4
1,524,778 - -1.4
1,525,040 + -0.6
1,525,040 + +0.3
1,525,040 + -0.9
1,525,040 + +0.8
1,525,166 - -0.7
1,525,166 - -2.1
1,525,241 - -0.4
1,525,251 + +0.0
1,525,252 - -1.0
1,525,252 - -0.7
1,525,338 + -0.4
1,525,860 - Pf6N2E2_1292 0.35 -1.0
1,525,894 - Pf6N2E2_1292 0.37 -3.1
1,525,933 + Pf6N2E2_1292 0.39 +0.9
1,525,934 - Pf6N2E2_1292 0.39 +0.0
1,526,652 + Pf6N2E2_1292 0.79 -0.3
1,526,652 + Pf6N2E2_1292 0.79 +0.2
1,526,652 + Pf6N2E2_1292 0.79 -1.2
1,526,653 - Pf6N2E2_1292 0.79 -0.8
1,526,653 - Pf6N2E2_1292 0.79 +0.0
1,526,653 - Pf6N2E2_1292 0.79 -1.1
1,526,664 + Pf6N2E2_1292 0.80 -1.6
1,526,763 + Pf6N2E2_1292 0.85 -1.3
1,526,911 - -3.6
1,526,911 - +0.3
1,526,911 - +0.5
1,526,950 + +0.5
1,526,950 + -1.1
1,527,053 + -0.2
1,527,053 + -1.0
1,527,053 + -0.0
1,527,053 + -0.6
1,527,053 + +0.0
1,527,053 + -0.3
1,527,525 + Pf6N2E2_1293 0.84 +1.5
1,527,529 + Pf6N2E2_1293 0.86 +0.6
1,527,529 + Pf6N2E2_1293 0.86 -0.2

Or see this region's nucleotide sequence