Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1291 and Pf6N2E2_1292 are separated by 377 nucleotides Pf6N2E2_1292 and Pf6N2E2_1293 are separated by 332 nucleotides Pf6N2E2_1293 and Pf6N2E2_1294 are separated by 15 nucleotides
Pf6N2E2_1291 - Ferrichrome-iron receptor, at 1,522,828 to 1,524,852
_1291
Pf6N2E2_1292 - Methyl-accepting chemotaxis protein, at 1,525,230 to 1,527,026
_1292
Pf6N2E2_1293 - COG2879, Hypothetical small protein yjiX, at 1,527,359 to 1,527,556
_1293
Pf6N2E2_1294 - Carbon starvation protein A, at 1,527,572 to 1,529,632
_1294
Position (kb)
1525
1526
1527
1528 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1524.267 kb on - strand, within Pf6N2E2_1291 at 1524.267 kb on - strand, within Pf6N2E2_1291 at 1524.464 kb on + strand, within Pf6N2E2_1291 at 1524.464 kb on + strand, within Pf6N2E2_1291 at 1524.778 kb on - strand at 1524.778 kb on - strand at 1525.040 kb on + strand at 1525.040 kb on + strand at 1525.040 kb on + strand at 1525.040 kb on + strand at 1525.166 kb on - strand at 1525.166 kb on - strand at 1525.241 kb on - strand at 1525.251 kb on + strand at 1525.252 kb on - strand at 1525.252 kb on - strand at 1525.338 kb on + strand at 1525.860 kb on - strand, within Pf6N2E2_1292 at 1525.894 kb on - strand, within Pf6N2E2_1292 at 1525.933 kb on + strand, within Pf6N2E2_1292 at 1525.934 kb on - strand, within Pf6N2E2_1292 at 1526.652 kb on + strand, within Pf6N2E2_1292 at 1526.652 kb on + strand, within Pf6N2E2_1292 at 1526.652 kb on + strand, within Pf6N2E2_1292 at 1526.653 kb on - strand, within Pf6N2E2_1292 at 1526.653 kb on - strand, within Pf6N2E2_1292 at 1526.653 kb on - strand, within Pf6N2E2_1292 at 1526.664 kb on + strand, within Pf6N2E2_1292 at 1526.763 kb on + strand, within Pf6N2E2_1292 at 1526.911 kb on - strand at 1526.911 kb on - strand at 1526.911 kb on - strand at 1526.950 kb on + strand at 1526.950 kb on + strand at 1527.053 kb on + strand at 1527.053 kb on + strand at 1527.053 kb on + strand at 1527.053 kb on + strand at 1527.053 kb on + strand at 1527.053 kb on + strand at 1527.525 kb on + strand, within Pf6N2E2_1293 at 1527.529 kb on + strand, within Pf6N2E2_1293 at 1527.529 kb on + strand, within Pf6N2E2_1293
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 1,524,267 - Pf6N2E2_1291 0.71 -0.1 1,524,267 - Pf6N2E2_1291 0.71 -1.2 1,524,464 + Pf6N2E2_1291 0.81 -0.4 1,524,464 + Pf6N2E2_1291 0.81 -1.5 1,524,778 - +1.4 1,524,778 - -1.4 1,525,040 + -0.6 1,525,040 + +0.3 1,525,040 + -0.9 1,525,040 + +0.8 1,525,166 - -0.7 1,525,166 - -2.1 1,525,241 - -0.4 1,525,251 + +0.0 1,525,252 - -1.0 1,525,252 - -0.7 1,525,338 + -0.4 1,525,860 - Pf6N2E2_1292 0.35 -1.0 1,525,894 - Pf6N2E2_1292 0.37 -3.1 1,525,933 + Pf6N2E2_1292 0.39 +0.9 1,525,934 - Pf6N2E2_1292 0.39 +0.0 1,526,652 + Pf6N2E2_1292 0.79 -0.3 1,526,652 + Pf6N2E2_1292 0.79 +0.2 1,526,652 + Pf6N2E2_1292 0.79 -1.2 1,526,653 - Pf6N2E2_1292 0.79 -0.8 1,526,653 - Pf6N2E2_1292 0.79 +0.0 1,526,653 - Pf6N2E2_1292 0.79 -1.1 1,526,664 + Pf6N2E2_1292 0.80 -1.6 1,526,763 + Pf6N2E2_1292 0.85 -1.3 1,526,911 - -3.6 1,526,911 - +0.3 1,526,911 - +0.5 1,526,950 + +0.5 1,526,950 + -1.1 1,527,053 + -0.2 1,527,053 + -1.0 1,527,053 + -0.0 1,527,053 + -0.6 1,527,053 + +0.0 1,527,053 + -0.3 1,527,525 + Pf6N2E2_1293 0.84 +1.5 1,527,529 + Pf6N2E2_1293 0.86 +0.6 1,527,529 + Pf6N2E2_1293 0.86 -0.2
Or see this region's nucleotide sequence