Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_119

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_118 and Pf6N2E2_119 overlap by 4 nucleotidesPf6N2E2_119 and Pf6N2E2_120 overlap by 4 nucleotides Pf6N2E2_118 - FIG00961753: hypothetical protein, at 164,733 to 166,103 _118 Pf6N2E2_119 - Glycosyltransferase, at 166,100 to 167,203 _119 Pf6N2E2_120 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 167,200 to 168,792 _120 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.172 kb on + strand, within Pf6N2E2_118at 165.173 kb on - strand, within Pf6N2E2_118at 165.364 kb on + strand, within Pf6N2E2_118at 165.384 kb on - strand, within Pf6N2E2_118at 165.474 kb on + strand, within Pf6N2E2_118at 165.475 kb on - strand, within Pf6N2E2_118at 165.589 kb on + strand, within Pf6N2E2_118at 165.778 kb on + strand, within Pf6N2E2_118at 165.812 kb on + strand, within Pf6N2E2_118at 165.813 kb on - strand, within Pf6N2E2_118at 165.982 kb on + strandat 166.131 kb on + strandat 166.131 kb on + strandat 166.132 kb on - strandat 166.294 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.455 kb on + strand, within Pf6N2E2_119at 166.822 kb on + strand, within Pf6N2E2_119at 166.823 kb on - strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 167.127 kb on + strandat 167.127 kb on + strandat 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.361 kb on - strand, within Pf6N2E2_120at 167.361 kb on - strand, within Pf6N2E2_120at 167.397 kb on + strand, within Pf6N2E2_120at 167.531 kb on + strand, within Pf6N2E2_120at 167.532 kb on - strand, within Pf6N2E2_120at 167.532 kb on - strand, within Pf6N2E2_120at 167.804 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.907 kb on - strand, within Pf6N2E2_120at 167.907 kb on - strand, within Pf6N2E2_120at 167.954 kb on + strand, within Pf6N2E2_120at 167.955 kb on - strand, within Pf6N2E2_120at 167.994 kb on - strand, within Pf6N2E2_120at 168.125 kb on + strand, within Pf6N2E2_120at 168.126 kb on - strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.147 kb on - strand, within Pf6N2E2_120at 168.197 kb on + strand, within Pf6N2E2_120at 168.197 kb on + strand, within Pf6N2E2_120

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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165,172 + Pf6N2E2_118 0.32 -1.1
165,172 + Pf6N2E2_118 0.32 +0.7
165,172 + Pf6N2E2_118 0.32 -0.4
165,172 + Pf6N2E2_118 0.32 -0.2
165,173 - Pf6N2E2_118 0.32 -0.7
165,364 + Pf6N2E2_118 0.46 -1.3
165,384 - Pf6N2E2_118 0.47 -0.3
165,474 + Pf6N2E2_118 0.54 -0.3
165,475 - Pf6N2E2_118 0.54 -0.1
165,589 + Pf6N2E2_118 0.62 -2.2
165,778 + Pf6N2E2_118 0.76 -2.3
165,812 + Pf6N2E2_118 0.79 -0.1
165,813 - Pf6N2E2_118 0.79 +0.4
165,982 + +0.5
166,131 + +0.1
166,131 + +0.4
166,132 - -0.2
166,294 + Pf6N2E2_119 0.18 +0.1
166,310 + Pf6N2E2_119 0.19 -1.0
166,310 + Pf6N2E2_119 0.19 -0.2
166,311 - Pf6N2E2_119 0.19 -0.5
166,311 - Pf6N2E2_119 0.19 -0.1
166,311 - Pf6N2E2_119 0.19 -0.1
166,455 + Pf6N2E2_119 0.32 -0.5
166,822 + Pf6N2E2_119 0.65 -0.1
166,823 - Pf6N2E2_119 0.65 -0.3
166,824 + Pf6N2E2_119 0.66 -0.2
166,824 + Pf6N2E2_119 0.66 +1.3
166,824 + Pf6N2E2_119 0.66 -0.8
166,824 + Pf6N2E2_119 0.66 -1.5
166,825 - Pf6N2E2_119 0.66 +0.4
166,825 - Pf6N2E2_119 0.66 -0.6
166,825 - Pf6N2E2_119 0.66 -1.0
166,825 - Pf6N2E2_119 0.66 -0.2
166,825 - Pf6N2E2_119 0.66 -0.5
166,825 - Pf6N2E2_119 0.66 +0.3
167,127 + -0.0
167,127 + +0.8
167,360 + Pf6N2E2_120 0.10 -0.6
167,360 + Pf6N2E2_120 0.10 +0.4
167,360 + Pf6N2E2_120 0.10 +1.3
167,360 + Pf6N2E2_120 0.10 -1.0
167,361 - Pf6N2E2_120 0.10 -0.6
167,361 - Pf6N2E2_120 0.10 +0.1
167,397 + Pf6N2E2_120 0.12 +0.6
167,531 + Pf6N2E2_120 0.21 +0.8
167,532 - Pf6N2E2_120 0.21 -0.3
167,532 - Pf6N2E2_120 0.21 +1.1
167,804 + Pf6N2E2_120 0.38 -0.3
167,906 + Pf6N2E2_120 0.44 -0.1
167,906 + Pf6N2E2_120 0.44 +1.5
167,906 + Pf6N2E2_120 0.44 -0.5
167,907 - Pf6N2E2_120 0.44 +1.1
167,907 - Pf6N2E2_120 0.44 -1.5
167,954 + Pf6N2E2_120 0.47 -0.4
167,955 - Pf6N2E2_120 0.47 -0.8
167,994 - Pf6N2E2_120 0.50 +0.5
168,125 + Pf6N2E2_120 0.58 +0.2
168,126 - Pf6N2E2_120 0.58 +0.0
168,146 + Pf6N2E2_120 0.59 +0.2
168,146 + Pf6N2E2_120 0.59 +0.3
168,146 + Pf6N2E2_120 0.59 +1.5
168,146 + Pf6N2E2_120 0.59 -0.3
168,147 - Pf6N2E2_120 0.59 -1.3
168,197 + Pf6N2E2_120 0.63 -0.6
168,197 + Pf6N2E2_120 0.63 +0.1

Or see this region's nucleotide sequence