Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07420

Experiment: Formate with nitrate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07410 and MMP_RS07415 are separated by 107 nucleotidesMMP_RS07415 and MMP_RS07420 are separated by 110 nucleotidesMMP_RS07420 and MMP_RS07425 are separated by 195 nucleotides MMP_RS07410: MMP_RS07410 - 4-demethylwyosine synthase TYW1, at 1,411,701 to 1,412,642 _RS07410 MMP_RS07415: MMP_RS07415 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 1,412,750 to 1,413,439 _RS07415 MMP_RS07420: MMP_RS07420 - metalloregulator ArsR/SmtB family transcription factor, at 1,413,550 to 1,413,837 _RS07420 MMP_RS07425: MMP_RS07425 - GTP-binding protein, at 1,414,033 to 1,415,142 _RS07425 Position (kb) 1413 1414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1412.619 kb on + strandat 1412.654 kb on - strandat 1412.654 kb on - strandat 1412.657 kb on + strandat 1412.672 kb on + strandat 1412.675 kb on - strandat 1412.679 kb on + strandat 1412.682 kb on - strandat 1412.691 kb on - strandat 1412.696 kb on - strandat 1412.696 kb on - strandat 1412.705 kb on - strandat 1412.705 kb on - strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.745 kb on + strandat 1412.745 kb on + strandat 1412.750 kb on + strandat 1412.763 kb on - strandat 1412.763 kb on - strandat 1412.763 kb on - strandat 1413.055 kb on - strand, within MMP_RS07415at 1413.067 kb on + strand, within MMP_RS07415at 1413.073 kb on + strand, within MMP_RS07415at 1413.195 kb on + strand, within MMP_RS07415at 1413.297 kb on - strand, within MMP_RS07415at 1413.365 kb on + strand, within MMP_RS07415at 1413.365 kb on + strand, within MMP_RS07415at 1413.366 kb on - strand, within MMP_RS07415at 1413.378 kb on - strandat 1413.379 kb on + strandat 1413.379 kb on + strandat 1413.445 kb on + strandat 1413.475 kb on - strandat 1413.526 kb on + strandat 1413.527 kb on - strandat 1413.557 kb on - strandat 1413.571 kb on - strandat 1413.615 kb on - strand, within MMP_RS07420at 1413.616 kb on + strand, within MMP_RS07420at 1413.639 kb on + strand, within MMP_RS07420at 1413.654 kb on - strand, within MMP_RS07420at 1413.775 kb on - strand, within MMP_RS07420at 1413.778 kb on - strand, within MMP_RS07420at 1413.778 kb on - strand, within MMP_RS07420at 1413.779 kb on + strand, within MMP_RS07420at 1413.779 kb on + strand, within MMP_RS07420at 1413.785 kb on - strand, within MMP_RS07420at 1413.797 kb on - strand, within MMP_RS07420at 1413.810 kb on + strandat 1413.813 kb on - strandat 1413.813 kb on - strandat 1413.813 kb on - strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.817 kb on + strandat 1413.875 kb on - strandat 1413.877 kb on - strandat 1413.877 kb on - strandat 1413.877 kb on - strandat 1413.896 kb on - strandat 1413.897 kb on + strandat 1413.897 kb on + strandat 1413.898 kb on - strandat 1413.898 kb on - strandat 1413.899 kb on + strandat 1413.919 kb on + strandat 1414.074 kb on + strandat 1414.076 kb on - strandat 1414.089 kb on - strandat 1414.089 kb on - strandat 1414.090 kb on + strandat 1414.138 kb on + strandat 1414.279 kb on + strand, within MMP_RS07425at 1414.451 kb on - strand, within MMP_RS07425at 1414.452 kb on + strand, within MMP_RS07425at 1414.633 kb on + strand, within MMP_RS07425at 1414.683 kb on + strand, within MMP_RS07425at 1414.685 kb on - strand, within MMP_RS07425at 1414.836 kb on + strand, within MMP_RS07425

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM
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1,412,619 + -0.5
1,412,654 - -0.4
1,412,654 - +0.7
1,412,657 + +0.3
1,412,672 + +2.5
1,412,675 - +0.4
1,412,679 + -0.0
1,412,682 - +0.8
1,412,691 - +0.4
1,412,696 - +1.4
1,412,696 - +0.2
1,412,705 - -0.8
1,412,705 - +0.6
1,412,741 + +2.3
1,412,741 + +2.1
1,412,745 + +2.3
1,412,745 + +2.0
1,412,750 + +1.2
1,412,763 - +1.2
1,412,763 - +1.6
1,412,763 - +2.2
1,413,055 - MMP_RS07415 0.44 +1.4
1,413,067 + MMP_RS07415 0.46 +2.1
1,413,073 + MMP_RS07415 0.47 +1.9
1,413,195 + MMP_RS07415 0.64 +1.8
1,413,297 - MMP_RS07415 0.79 +0.7
1,413,365 + MMP_RS07415 0.89 +1.7
1,413,365 + MMP_RS07415 0.89 +2.1
1,413,366 - MMP_RS07415 0.89 +2.0
1,413,378 - +0.8
1,413,379 + +1.0
1,413,379 + +1.3
1,413,445 + +0.9
1,413,475 - +1.1
1,413,526 + -3.7
1,413,527 - -3.2
1,413,557 - -3.7
1,413,571 - -1.1
1,413,615 - MMP_RS07420 0.23 -1.9
1,413,616 + MMP_RS07420 0.23 -2.1
1,413,639 + MMP_RS07420 0.31 -3.3
1,413,654 - MMP_RS07420 0.36 -3.6
1,413,775 - MMP_RS07420 0.78 -4.0
1,413,778 - MMP_RS07420 0.79 -2.4
1,413,778 - MMP_RS07420 0.79 -2.3
1,413,779 + MMP_RS07420 0.80 -3.1
1,413,779 + MMP_RS07420 0.80 -2.4
1,413,785 - MMP_RS07420 0.82 -2.7
1,413,797 - MMP_RS07420 0.86 +1.2
1,413,810 + +0.9
1,413,813 - +0.7
1,413,813 - +1.4
1,413,813 - +0.7
1,413,814 + +0.6
1,413,814 + +1.7
1,413,814 + +1.1
1,413,814 + +0.2
1,413,814 + +0.2
1,413,817 + +0.5
1,413,875 - -0.3
1,413,877 - +0.7
1,413,877 - +0.4
1,413,877 - +1.1
1,413,896 - -1.3
1,413,897 + -1.8
1,413,897 + -2.1
1,413,898 - -1.8
1,413,898 - -1.0
1,413,899 + -0.6
1,413,919 + -1.2
1,414,074 + -0.7
1,414,076 - -0.9
1,414,089 - -0.8
1,414,089 - -2.4
1,414,090 + -0.4
1,414,138 + -2.4
1,414,279 + MMP_RS07425 0.22 -2.4
1,414,451 - MMP_RS07425 0.38 -1.1
1,414,452 + MMP_RS07425 0.38 -0.2
1,414,633 + MMP_RS07425 0.54 -2.3
1,414,683 + MMP_RS07425 0.59 -2.2
1,414,685 - MMP_RS07425 0.59 -1.4
1,414,836 + MMP_RS07425 0.72 +0.1

Or see this region's nucleotide sequence