Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06710

Experiment: Formate with nitrate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06705 and MMP_RS06710 are separated by 244 nucleotidesMMP_RS06710 and MMP_RS06715 are separated by 209 nucleotides MMP_RS06705: MMP_RS06705 - formate/nitrite transporter family protein, at 1,287,191 to 1,288,015 _RS06705 MMP_RS06710: MMP_RS06710 - selenium-binding protein, at 1,288,260 to 1,288,505 _RS06710 MMP_RS06715: MMP_RS06715 - cache domain-containing protein, at 1,288,715 to 1,290,634 _RS06715 Position (kb) 1288 1289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1287.425 kb on + strand, within MMP_RS06705at 1287.446 kb on - strand, within MMP_RS06705at 1287.447 kb on + strand, within MMP_RS06705at 1287.529 kb on + strand, within MMP_RS06705at 1287.645 kb on - strand, within MMP_RS06705at 1287.751 kb on - strand, within MMP_RS06705at 1287.829 kb on - strand, within MMP_RS06705at 1287.904 kb on + strand, within MMP_RS06705at 1287.904 kb on + strand, within MMP_RS06705at 1288.019 kb on + strandat 1288.022 kb on + strandat 1288.067 kb on + strandat 1288.070 kb on - strandat 1288.070 kb on - strandat 1288.071 kb on + strandat 1288.071 kb on + strandat 1288.074 kb on - strandat 1288.075 kb on + strandat 1288.075 kb on + strandat 1288.075 kb on + strandat 1288.077 kb on - strandat 1288.078 kb on + strandat 1288.078 kb on + strandat 1288.079 kb on - strandat 1288.080 kb on + strandat 1288.080 kb on + strandat 1288.080 kb on + strandat 1288.081 kb on - strandat 1288.081 kb on - strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.084 kb on - strandat 1288.110 kb on - strandat 1288.121 kb on - strandat 1288.129 kb on - strandat 1288.219 kb on + strandat 1288.441 kb on - strand, within MMP_RS06710at 1288.441 kb on - strand, within MMP_RS06710at 1288.475 kb on - strand, within MMP_RS06710at 1288.475 kb on - strand, within MMP_RS06710at 1288.478 kb on - strand, within MMP_RS06710at 1288.479 kb on + strand, within MMP_RS06710at 1288.482 kb on - strandat 1288.483 kb on + strandat 1288.518 kb on - strandat 1288.520 kb on - strandat 1288.520 kb on - strandat 1288.521 kb on + strandat 1288.521 kb on + strandat 1288.522 kb on - strandat 1288.545 kb on - strandat 1288.568 kb on + strandat 1288.568 kb on + strandat 1288.568 kb on + strandat 1288.568 kb on + strandat 1288.569 kb on - strandat 1288.569 kb on - strandat 1288.569 kb on - strandat 1288.570 kb on + strandat 1288.570 kb on + strandat 1288.570 kb on + strandat 1288.571 kb on - strandat 1288.572 kb on + strandat 1288.572 kb on + strandat 1288.572 kb on + strandat 1288.576 kb on - strandat 1288.577 kb on + strandat 1288.577 kb on + strandat 1288.610 kb on - strandat 1288.653 kb on - strandat 1288.707 kb on + strandat 1288.707 kb on + strandat 1288.708 kb on - strandat 1288.708 kb on - strandat 1288.711 kb on - strandat 1288.712 kb on + strandat 1288.819 kb on - strandat 1288.980 kb on + strand, within MMP_RS06715at 1288.986 kb on + strand, within MMP_RS06715at 1289.105 kb on + strand, within MMP_RS06715at 1289.141 kb on - strand, within MMP_RS06715at 1289.219 kb on - strand, within MMP_RS06715at 1289.220 kb on + strand, within MMP_RS06715at 1289.298 kb on + strand, within MMP_RS06715at 1289.335 kb on + strand, within MMP_RS06715at 1289.476 kb on - strand, within MMP_RS06715at 1289.498 kb on + strand, within MMP_RS06715

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM
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1,287,425 + MMP_RS06705 0.28 +0.7
1,287,446 - MMP_RS06705 0.31 +0.6
1,287,447 + MMP_RS06705 0.31 -1.4
1,287,529 + MMP_RS06705 0.41 +1.0
1,287,645 - MMP_RS06705 0.55 +0.9
1,287,751 - MMP_RS06705 0.68 +2.1
1,287,829 - MMP_RS06705 0.77 +2.1
1,287,904 + MMP_RS06705 0.86 +1.7
1,287,904 + MMP_RS06705 0.86 +2.1
1,288,019 + +1.5
1,288,022 + +2.1
1,288,067 + +2.2
1,288,070 - +1.5
1,288,070 - +2.5
1,288,071 + +2.3
1,288,071 + +1.0
1,288,074 - +1.2
1,288,075 + +1.5
1,288,075 + +1.8
1,288,075 + +1.8
1,288,077 - +2.8
1,288,078 + +1.7
1,288,078 + +2.5
1,288,079 - +2.1
1,288,080 + +1.8
1,288,080 + +2.2
1,288,080 + +1.8
1,288,081 - +2.1
1,288,081 - +2.5
1,288,082 + +1.7
1,288,082 + +2.3
1,288,082 + +2.0
1,288,082 + +1.8
1,288,084 - +2.5
1,288,110 - +1.9
1,288,121 - +1.0
1,288,129 - +0.8
1,288,219 + -1.0
1,288,441 - MMP_RS06710 0.74 -1.4
1,288,441 - MMP_RS06710 0.74 -3.0
1,288,475 - MMP_RS06710 0.87 -1.8
1,288,475 - MMP_RS06710 0.87 -3.7
1,288,478 - MMP_RS06710 0.89 -2.3
1,288,479 + MMP_RS06710 0.89 -1.3
1,288,482 - -3.0
1,288,483 + +0.4
1,288,518 - -1.2
1,288,520 - -1.1
1,288,520 - -2.0
1,288,521 + -0.7
1,288,521 + -2.2
1,288,522 - -2.0
1,288,545 - -1.9
1,288,568 + -1.3
1,288,568 + -0.2
1,288,568 + -2.7
1,288,568 + -1.1
1,288,569 - -2.2
1,288,569 - -1.9
1,288,569 - -2.6
1,288,570 + -1.6
1,288,570 + -3.1
1,288,570 + -0.9
1,288,571 - -2.0
1,288,572 + -1.5
1,288,572 + -2.1
1,288,572 + -1.8
1,288,576 - -0.8
1,288,577 + -1.9
1,288,577 + -0.9
1,288,610 - -0.6
1,288,653 - +0.7
1,288,707 + -0.2
1,288,707 + +0.1
1,288,708 - +0.2
1,288,708 - +1.0
1,288,711 - -0.6
1,288,712 + +0.5
1,288,819 - +1.1
1,288,980 + MMP_RS06715 0.14 -0.0
1,288,986 + MMP_RS06715 0.14 +0.8
1,289,105 + MMP_RS06715 0.20 +1.4
1,289,141 - MMP_RS06715 0.22 +1.8
1,289,219 - MMP_RS06715 0.26 +0.2
1,289,220 + MMP_RS06715 0.26 +0.8
1,289,298 + MMP_RS06715 0.30 +0.7
1,289,335 + MMP_RS06715 0.32 +1.0
1,289,476 - MMP_RS06715 0.40 +0.5
1,289,498 + MMP_RS06715 0.41 +1.0

Or see this region's nucleotide sequence