Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06705 and MMP_RS06710 are separated by 244 nucleotides MMP_RS06710 and MMP_RS06715 are separated by 209 nucleotides
MMP_RS06705: MMP_RS06705 - formate/nitrite transporter family protein, at 1,287,191 to 1,288,015
_RS06705
MMP_RS06710: MMP_RS06710 - selenium-binding protein, at 1,288,260 to 1,288,505
_RS06710
MMP_RS06715: MMP_RS06715 - cache domain-containing protein, at 1,288,715 to 1,290,634
_RS06715
Position (kb)
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1287.425 kb on + strand, within MMP_RS06705 at 1287.446 kb on - strand, within MMP_RS06705 at 1287.447 kb on + strand, within MMP_RS06705 at 1287.529 kb on + strand, within MMP_RS06705 at 1287.645 kb on - strand, within MMP_RS06705 at 1287.751 kb on - strand, within MMP_RS06705 at 1287.829 kb on - strand, within MMP_RS06705 at 1287.904 kb on + strand, within MMP_RS06705 at 1287.904 kb on + strand, within MMP_RS06705 at 1288.019 kb on + strand at 1288.022 kb on + strand at 1288.067 kb on + strand at 1288.070 kb on - strand at 1288.070 kb on - strand at 1288.071 kb on + strand at 1288.071 kb on + strand at 1288.074 kb on - strand at 1288.075 kb on + strand at 1288.075 kb on + strand at 1288.075 kb on + strand at 1288.077 kb on - strand at 1288.078 kb on + strand at 1288.078 kb on + strand at 1288.079 kb on - strand at 1288.080 kb on + strand at 1288.080 kb on + strand at 1288.080 kb on + strand at 1288.081 kb on - strand at 1288.081 kb on - strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.084 kb on - strand at 1288.110 kb on - strand at 1288.121 kb on - strand at 1288.129 kb on - strand at 1288.219 kb on + strand at 1288.441 kb on - strand, within MMP_RS06710 at 1288.441 kb on - strand, within MMP_RS06710 at 1288.475 kb on - strand, within MMP_RS06710 at 1288.475 kb on - strand, within MMP_RS06710 at 1288.478 kb on - strand, within MMP_RS06710 at 1288.479 kb on + strand, within MMP_RS06710 at 1288.482 kb on - strand at 1288.483 kb on + strand at 1288.518 kb on - strand at 1288.520 kb on - strand at 1288.520 kb on - strand at 1288.521 kb on + strand at 1288.521 kb on + strand at 1288.522 kb on - strand at 1288.545 kb on - strand at 1288.568 kb on + strand at 1288.568 kb on + strand at 1288.568 kb on + strand at 1288.568 kb on + strand at 1288.569 kb on - strand at 1288.569 kb on - strand at 1288.569 kb on - strand at 1288.570 kb on + strand at 1288.570 kb on + strand at 1288.570 kb on + strand at 1288.571 kb on - strand at 1288.572 kb on + strand at 1288.572 kb on + strand at 1288.572 kb on + strand at 1288.576 kb on - strand at 1288.577 kb on + strand at 1288.577 kb on + strand at 1288.610 kb on - strand at 1288.653 kb on - strand at 1288.707 kb on + strand at 1288.707 kb on + strand at 1288.708 kb on - strand at 1288.708 kb on - strand at 1288.711 kb on - strand at 1288.712 kb on + strand at 1288.819 kb on - strand at 1288.980 kb on + strand, within MMP_RS06715 at 1288.986 kb on + strand, within MMP_RS06715 at 1289.105 kb on + strand, within MMP_RS06715 at 1289.141 kb on - strand, within MMP_RS06715 at 1289.219 kb on - strand, within MMP_RS06715 at 1289.220 kb on + strand, within MMP_RS06715 at 1289.298 kb on + strand, within MMP_RS06715 at 1289.335 kb on + strand, within MMP_RS06715 at 1289.476 kb on - strand, within MMP_RS06715 at 1289.498 kb on + strand, within MMP_RS06715
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 1,287,425 + MMP_RS06705 0.28 +0.7 1,287,446 - MMP_RS06705 0.31 +0.6 1,287,447 + MMP_RS06705 0.31 -1.4 1,287,529 + MMP_RS06705 0.41 +1.0 1,287,645 - MMP_RS06705 0.55 +0.9 1,287,751 - MMP_RS06705 0.68 +2.1 1,287,829 - MMP_RS06705 0.77 +2.1 1,287,904 + MMP_RS06705 0.86 +1.7 1,287,904 + MMP_RS06705 0.86 +2.1 1,288,019 + +1.5 1,288,022 + +2.1 1,288,067 + +2.2 1,288,070 - +1.5 1,288,070 - +2.5 1,288,071 + +2.3 1,288,071 + +1.0 1,288,074 - +1.2 1,288,075 + +1.5 1,288,075 + +1.8 1,288,075 + +1.8 1,288,077 - +2.8 1,288,078 + +1.7 1,288,078 + +2.5 1,288,079 - +2.1 1,288,080 + +1.8 1,288,080 + +2.2 1,288,080 + +1.8 1,288,081 - +2.1 1,288,081 - +2.5 1,288,082 + +1.7 1,288,082 + +2.3 1,288,082 + +2.0 1,288,082 + +1.8 1,288,084 - +2.5 1,288,110 - +1.9 1,288,121 - +1.0 1,288,129 - +0.8 1,288,219 + -1.0 1,288,441 - MMP_RS06710 0.74 -1.4 1,288,441 - MMP_RS06710 0.74 -3.0 1,288,475 - MMP_RS06710 0.87 -1.8 1,288,475 - MMP_RS06710 0.87 -3.7 1,288,478 - MMP_RS06710 0.89 -2.3 1,288,479 + MMP_RS06710 0.89 -1.3 1,288,482 - -3.0 1,288,483 + +0.4 1,288,518 - -1.2 1,288,520 - -1.1 1,288,520 - -2.0 1,288,521 + -0.7 1,288,521 + -2.2 1,288,522 - -2.0 1,288,545 - -1.9 1,288,568 + -1.3 1,288,568 + -0.2 1,288,568 + -2.7 1,288,568 + -1.1 1,288,569 - -2.2 1,288,569 - -1.9 1,288,569 - -2.6 1,288,570 + -1.6 1,288,570 + -3.1 1,288,570 + -0.9 1,288,571 - -2.0 1,288,572 + -1.5 1,288,572 + -2.1 1,288,572 + -1.8 1,288,576 - -0.8 1,288,577 + -1.9 1,288,577 + -0.9 1,288,610 - -0.6 1,288,653 - +0.7 1,288,707 + -0.2 1,288,707 + +0.1 1,288,708 - +0.2 1,288,708 - +1.0 1,288,711 - -0.6 1,288,712 + +0.5 1,288,819 - +1.1 1,288,980 + MMP_RS06715 0.14 -0.0 1,288,986 + MMP_RS06715 0.14 +0.8 1,289,105 + MMP_RS06715 0.20 +1.4 1,289,141 - MMP_RS06715 0.22 +1.8 1,289,219 - MMP_RS06715 0.26 +0.2 1,289,220 + MMP_RS06715 0.26 +0.8 1,289,298 + MMP_RS06715 0.30 +0.7 1,289,335 + MMP_RS06715 0.32 +1.0 1,289,476 - MMP_RS06715 0.40 +0.5 1,289,498 + MMP_RS06715 0.41 +1.0
Or see this region's nucleotide sequence