Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04480 and MMP_RS04485 are separated by 0 nucleotides MMP_RS04485 and MMP_RS04490 are separated by 149 nucleotides MMP_RS04490 and MMP_RS04495 are separated by 8 nucleotides
MMP_RS04480: MMP_RS04480 - lysine 2 3-aminomutase, at 852,237 to 853,538
_RS04480
MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363
_RS04485
MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989
_RS04490
MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164
_RS04495
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 852.622 kb on - strand, within MMP_RS04480 at 852.627 kb on - strand, within MMP_RS04480 at 852.632 kb on + strand, within MMP_RS04480 at 852.741 kb on + strand, within MMP_RS04480 at 852.752 kb on - strand, within MMP_RS04480 at 852.753 kb on + strand, within MMP_RS04480 at 852.757 kb on - strand, within MMP_RS04480 at 852.812 kb on + strand, within MMP_RS04480 at 852.840 kb on + strand, within MMP_RS04480 at 852.858 kb on + strand, within MMP_RS04480 at 852.953 kb on - strand, within MMP_RS04480 at 852.953 kb on - strand, within MMP_RS04480 at 852.954 kb on + strand, within MMP_RS04480 at 853.077 kb on - strand, within MMP_RS04480 at 853.077 kb on - strand, within MMP_RS04480 at 853.078 kb on + strand, within MMP_RS04480 at 853.129 kb on + strand, within MMP_RS04480 at 853.131 kb on - strand, within MMP_RS04480 at 853.131 kb on - strand, within MMP_RS04480 at 853.132 kb on + strand, within MMP_RS04480 at 853.214 kb on + strand, within MMP_RS04480 at 853.245 kb on + strand, within MMP_RS04480 at 853.248 kb on - strand, within MMP_RS04480 at 853.248 kb on - strand, within MMP_RS04480 at 853.249 kb on + strand, within MMP_RS04480 at 853.255 kb on - strand, within MMP_RS04480 at 853.299 kb on - strand, within MMP_RS04480 at 853.300 kb on + strand, within MMP_RS04480 at 853.362 kb on - strand, within MMP_RS04480 at 853.478 kb on + strand at 853.495 kb on - strand at 853.495 kb on - strand at 853.496 kb on + strand at 853.580 kb on + strand at 853.600 kb on - strand at 853.601 kb on + strand at 853.601 kb on + strand at 853.601 kb on + strand at 853.602 kb on - strand at 853.602 kb on - strand at 853.603 kb on + strand at 853.604 kb on - strand at 853.605 kb on + strand at 853.735 kb on + strand, within MMP_RS04485 at 853.782 kb on - strand, within MMP_RS04485 at 853.783 kb on + strand, within MMP_RS04485 at 853.787 kb on - strand, within MMP_RS04485 at 853.788 kb on + strand, within MMP_RS04485 at 853.788 kb on + strand, within MMP_RS04485 at 853.945 kb on - strand, within MMP_RS04485 at 853.945 kb on - strand, within MMP_RS04485 at 854.007 kb on + strand, within MMP_RS04485 at 854.007 kb on + strand, within MMP_RS04485 at 854.008 kb on - strand, within MMP_RS04485 at 854.009 kb on + strand, within MMP_RS04485 at 854.011 kb on - strand, within MMP_RS04485 at 854.032 kb on - strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.167 kb on + strand, within MMP_RS04485 at 854.175 kb on - strand, within MMP_RS04485 at 854.177 kb on - strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.279 kb on - strand, within MMP_RS04485 at 854.303 kb on - strand at 854.306 kb on - strand at 854.306 kb on - strand at 854.346 kb on - strand at 854.425 kb on + strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.430 kb on - strand at 854.431 kb on + strand at 854.431 kb on + strand at 854.481 kb on - strand at 854.486 kb on - strand at 854.492 kb on + strand at 854.492 kb on + strand at 854.619 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.639 kb on + strand, within MMP_RS04490 at 854.665 kb on + strand, within MMP_RS04490 at 854.698 kb on + strand, within MMP_RS04490 at 854.706 kb on + strand, within MMP_RS04490 at 854.756 kb on + strand, within MMP_RS04490 at 854.768 kb on + strand, within MMP_RS04490 at 854.837 kb on + strand, within MMP_RS04490 at 854.841 kb on - strand, within MMP_RS04490 at 854.849 kb on + strand, within MMP_RS04490 at 854.862 kb on - strand, within MMP_RS04490 at 854.862 kb on - strand, within MMP_RS04490 at 854.888 kb on - strand, within MMP_RS04490 at 854.926 kb on - strand, within MMP_RS04490 at 854.926 kb on - strand, within MMP_RS04490 at 854.927 kb on + strand, within MMP_RS04490 at 854.931 kb on - strand, within MMP_RS04490 at 854.965 kb on - strand at 854.965 kb on - strand at 854.966 kb on + strand at 855.040 kb on + strand at 855.041 kb on - strand at 855.066 kb on + strand at 855.230 kb on - strand, within MMP_RS04495 at 855.262 kb on + strand, within MMP_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 852,622 - MMP_RS04480 0.30 -1.2 852,627 - MMP_RS04480 0.30 -1.1 852,632 + MMP_RS04480 0.30 -1.1 852,741 + MMP_RS04480 0.39 -1.9 852,752 - MMP_RS04480 0.40 -1.4 852,753 + MMP_RS04480 0.40 -0.2 852,757 - MMP_RS04480 0.40 -1.2 852,812 + MMP_RS04480 0.44 -1.0 852,840 + MMP_RS04480 0.46 -0.0 852,858 + MMP_RS04480 0.48 -0.9 852,953 - MMP_RS04480 0.55 -1.0 852,953 - MMP_RS04480 0.55 -0.2 852,954 + MMP_RS04480 0.55 -1.8 853,077 - MMP_RS04480 0.65 -2.0 853,077 - MMP_RS04480 0.65 -0.9 853,078 + MMP_RS04480 0.65 -1.1 853,129 + MMP_RS04480 0.69 -2.0 853,131 - MMP_RS04480 0.69 -1.1 853,131 - MMP_RS04480 0.69 -1.4 853,132 + MMP_RS04480 0.69 -1.3 853,214 + MMP_RS04480 0.75 -1.3 853,245 + MMP_RS04480 0.77 -0.3 853,248 - MMP_RS04480 0.78 -0.3 853,248 - MMP_RS04480 0.78 -1.6 853,249 + MMP_RS04480 0.78 -1.6 853,255 - MMP_RS04480 0.78 -0.9 853,299 - MMP_RS04480 0.82 -0.0 853,300 + MMP_RS04480 0.82 -0.2 853,362 - MMP_RS04480 0.86 -1.6 853,478 + -1.1 853,495 - -1.1 853,495 - -1.5 853,496 + -0.9 853,580 + -0.6 853,600 - -0.2 853,601 + -1.0 853,601 + -1.7 853,601 + -0.8 853,602 - -1.2 853,602 - -1.8 853,603 + -1.5 853,604 - -0.9 853,605 + +0.3 853,735 + MMP_RS04485 0.24 -0.2 853,782 - MMP_RS04485 0.29 -0.3 853,783 + MMP_RS04485 0.30 -1.3 853,787 - MMP_RS04485 0.30 -0.7 853,788 + MMP_RS04485 0.30 -1.7 853,788 + MMP_RS04485 0.30 -0.7 853,945 - MMP_RS04485 0.49 -1.2 853,945 - MMP_RS04485 0.49 -0.9 854,007 + MMP_RS04485 0.57 -0.7 854,007 + MMP_RS04485 0.57 -0.5 854,008 - MMP_RS04485 0.57 -1.0 854,009 + MMP_RS04485 0.57 -1.5 854,011 - MMP_RS04485 0.57 -1.4 854,032 - MMP_RS04485 0.60 -0.3 854,097 + MMP_RS04485 0.68 -0.3 854,097 + MMP_RS04485 0.68 -0.6 854,167 + MMP_RS04485 0.76 -0.5 854,175 - MMP_RS04485 0.77 -0.4 854,177 - MMP_RS04485 0.77 -0.8 854,178 + MMP_RS04485 0.77 -0.4 854,178 + MMP_RS04485 0.77 -0.9 854,178 + MMP_RS04485 0.77 -1.0 854,178 + MMP_RS04485 0.77 -0.9 854,178 + MMP_RS04485 0.77 -0.9 854,279 - MMP_RS04485 0.90 -1.1 854,303 - -1.1 854,306 - -0.5 854,306 - -1.3 854,346 - -1.5 854,425 + -0.5 854,428 - +0.4 854,428 - +1.3 854,428 - +0.2 854,428 - -0.5 854,429 + +0.4 854,429 + -0.2 854,429 + +0.2 854,429 + -1.0 854,429 + +0.1 854,429 + +0.2 854,430 - +1.0 854,431 + +0.4 854,431 + +1.1 854,481 - +0.7 854,486 - -0.0 854,492 + +0.3 854,492 + -0.1 854,619 - MMP_RS04490 0.22 -0.3 854,638 - MMP_RS04490 0.26 +0.4 854,638 - MMP_RS04490 0.26 +0.4 854,638 - MMP_RS04490 0.26 +0.1 854,638 - MMP_RS04490 0.26 +0.5 854,638 - MMP_RS04490 0.26 -1.3 854,639 + MMP_RS04490 0.26 -0.7 854,665 + MMP_RS04490 0.32 -0.0 854,698 + MMP_RS04490 0.39 +0.1 854,706 + MMP_RS04490 0.40 +0.2 854,756 + MMP_RS04490 0.51 +0.9 854,768 + MMP_RS04490 0.53 -0.5 854,837 + MMP_RS04490 0.68 -0.1 854,841 - MMP_RS04490 0.69 +0.2 854,849 + MMP_RS04490 0.70 +1.1 854,862 - MMP_RS04490 0.73 +0.2 854,862 - MMP_RS04490 0.73 +0.2 854,888 - MMP_RS04490 0.79 -1.7 854,926 - MMP_RS04490 0.87 +0.1 854,926 - MMP_RS04490 0.87 +0.2 854,927 + MMP_RS04490 0.87 -0.2 854,931 - MMP_RS04490 0.88 +0.1 854,965 - +0.5 854,965 - +1.1 854,966 + +0.6 855,040 + -0.0 855,041 - +0.2 855,066 + -0.8 855,230 - MMP_RS04495 0.20 +1.1 855,262 + MMP_RS04495 0.23 +0.3
Or see this region's nucleotide sequence