Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03270 and MMP_RS03275 are separated by 64 nucleotides MMP_RS03275 and MMP_RS03280 are separated by 63 nucleotides MMP_RS03280 and MMP_RS03285 are separated by 117 nucleotides MMP_RS03285 and MMP_RS03290 are separated by 82 nucleotides MMP_RS03290 and MMP_RS03295 are separated by 9 nucleotides
MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600
_RS03270
MMP_RS03275: MMP_RS03275 - TIGR00266 family protein, at 617,665 to 618,333
_RS03275
MMP_RS03280: MMP_RS03280 - pyridoxamine 5'-phosphate oxidase family protein, at 618,397 to 618,798
_RS03280
MMP_RS03285: MMP_RS03285 - 50S ribosomal protein L14e, at 618,916 to 619,149
_RS03285
MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768
_RS03290
MMP_RS03295: MMP_RS03295 - 50S ribosomal protein L34e, at 619,778 to 620,047
_RS03295
Position (kb) 618
619 Strain fitness (log2 ratio) -2
-1
0
1 at 617.434 kb on - strand, within MMP_RS03270 at 617.472 kb on - strand, within MMP_RS03270 at 617.650 kb on + strand at 617.783 kb on - strand, within MMP_RS03275 at 617.784 kb on + strand, within MMP_RS03275 at 617.853 kb on + strand, within MMP_RS03275 at 617.913 kb on - strand, within MMP_RS03275 at 617.915 kb on - strand, within MMP_RS03275 at 618.232 kb on - strand, within MMP_RS03275 at 618.233 kb on + strand, within MMP_RS03275 at 618.308 kb on + strand at 618.395 kb on + strand at 618.395 kb on + strand at 618.443 kb on - strand, within MMP_RS03280 at 618.482 kb on - strand, within MMP_RS03280 at 618.524 kb on - strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.658 kb on - strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.746 kb on + strand, within MMP_RS03280 at 618.753 kb on + strand, within MMP_RS03280 at 618.779 kb on - strand at 618.826 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.937 kb on - strand at 618.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 617,434 - MMP_RS03270 0.82 -0.3 617,472 - MMP_RS03270 0.86 +1.0 617,650 + -0.3 617,783 - MMP_RS03275 0.18 -0.4 617,784 + MMP_RS03275 0.18 -0.1 617,853 + MMP_RS03275 0.28 +0.2 617,913 - MMP_RS03275 0.37 -0.9 617,915 - MMP_RS03275 0.37 -0.2 618,232 - MMP_RS03275 0.85 +0.3 618,233 + MMP_RS03275 0.85 +0.8 618,308 + -1.7 618,395 + -0.6 618,395 + +0.4 618,443 - MMP_RS03280 0.11 -0.8 618,482 - MMP_RS03280 0.21 -1.6 618,524 - MMP_RS03280 0.32 -1.3 618,579 + MMP_RS03280 0.45 -0.7 618,579 + MMP_RS03280 0.45 -0.7 618,658 - MMP_RS03280 0.65 -1.8 618,742 + MMP_RS03280 0.86 -0.7 618,742 + MMP_RS03280 0.86 -0.8 618,746 + MMP_RS03280 0.87 -1.3 618,753 + MMP_RS03280 0.89 -1.0 618,779 - -0.4 618,826 - +0.0 618,842 - -1.1 618,842 - +0.5 618,842 - -1.9 618,937 - +0.2 618,937 - -0.8
Or see this region's nucleotide sequence