Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03115

Experiment: Formate with nitrate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03105 and MMP_RS03110 are separated by 4 nucleotidesMMP_RS03110 and MMP_RS03115 are separated by 36 nucleotidesMMP_RS03115 and MMP_RS03120 are separated by 10 nucleotidesMMP_RS03120 and MMP_RS03125 overlap by 4 nucleotides MMP_RS03105: MMP_RS03105 - radical SAM protein, at 585,799 to 587,331 _RS03105 MMP_RS03110: MMP_RS03110 - glycosyltransferase family 2 protein, at 587,336 to 588,031 _RS03110 MMP_RS03115: MMP_RS03115 - hypothetical protein, at 588,068 to 588,727 _RS03115 MMP_RS03120: MMP_RS03120 - hypothetical protein, at 588,738 to 588,920 _RS03120 MMP_RS03125: MMP_RS03125 - cell division ATPase MinD, at 588,917 to 589,702 _RS03125 Position (kb) 588 589Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 587.111 kb on - strand, within MMP_RS03105at 587.157 kb on + strand, within MMP_RS03105at 587.228 kb on - strandat 587.349 kb on + strandat 587.352 kb on + strandat 587.352 kb on + strandat 587.352 kb on + strandat 587.396 kb on + strandat 587.398 kb on - strandat 587.398 kb on - strandat 587.399 kb on + strandat 587.403 kb on - strandat 587.404 kb on + strandat 587.425 kb on + strand, within MMP_RS03110at 587.435 kb on - strand, within MMP_RS03110at 587.440 kb on + strand, within MMP_RS03110at 587.487 kb on + strand, within MMP_RS03110at 587.551 kb on - strand, within MMP_RS03110at 587.573 kb on + strand, within MMP_RS03110at 587.662 kb on - strand, within MMP_RS03110at 587.662 kb on - strand, within MMP_RS03110at 587.663 kb on + strand, within MMP_RS03110at 587.732 kb on + strand, within MMP_RS03110at 587.803 kb on + strand, within MMP_RS03110at 587.864 kb on - strand, within MMP_RS03110at 587.920 kb on - strand, within MMP_RS03110at 587.939 kb on - strand, within MMP_RS03110at 587.961 kb on + strand, within MMP_RS03110at 588.047 kb on + strandat 588.065 kb on + strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.102 kb on + strandat 588.102 kb on + strandat 588.104 kb on - strandat 588.106 kb on - strandat 588.107 kb on + strandat 588.110 kb on - strandat 588.111 kb on + strandat 588.116 kb on - strandat 588.128 kb on - strandat 588.128 kb on - strandat 588.128 kb on - strandat 588.129 kb on + strandat 588.130 kb on - strandat 588.130 kb on - strandat 588.130 kb on - strandat 588.131 kb on + strandat 588.131 kb on + strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.133 kb on + strandat 588.133 kb on + strandat 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.137 kb on - strand, within MMP_RS03115at 588.137 kb on - strand, within MMP_RS03115at 588.138 kb on + strand, within MMP_RS03115at 588.139 kb on - strand, within MMP_RS03115at 588.140 kb on + strand, within MMP_RS03115at 588.202 kb on - strand, within MMP_RS03115at 588.203 kb on + strand, within MMP_RS03115at 588.209 kb on + strand, within MMP_RS03115at 588.220 kb on - strand, within MMP_RS03115at 588.225 kb on + strand, within MMP_RS03115at 588.253 kb on - strand, within MMP_RS03115at 588.253 kb on - strand, within MMP_RS03115at 588.254 kb on + strand, within MMP_RS03115at 588.272 kb on + strand, within MMP_RS03115at 588.289 kb on - strand, within MMP_RS03115at 588.290 kb on + strand, within MMP_RS03115at 588.341 kb on + strand, within MMP_RS03115at 588.344 kb on - strand, within MMP_RS03115at 588.493 kb on - strand, within MMP_RS03115at 588.498 kb on + strand, within MMP_RS03115at 588.498 kb on + strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.538 kb on + strand, within MMP_RS03115at 588.554 kb on + strand, within MMP_RS03115at 588.581 kb on + strand, within MMP_RS03115at 588.689 kb on - strandat 588.712 kb on + strandat 588.717 kb on + strandat 588.727 kb on - strandat 588.728 kb on + strandat 588.880 kb on + strand, within MMP_RS03120at 588.880 kb on + strand, within MMP_RS03120at 588.888 kb on - strand, within MMP_RS03120at 588.891 kb on - strand, within MMP_RS03120at 588.938 kb on - strandat 588.993 kb on - strandat 589.069 kb on - strand, within MMP_RS03125at 589.129 kb on - strand, within MMP_RS03125at 589.284 kb on + strand, within MMP_RS03125at 589.295 kb on - strand, within MMP_RS03125at 589.322 kb on + strand, within MMP_RS03125at 589.596 kb on + strand, within MMP_RS03125at 589.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM
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587,111 - MMP_RS03105 0.86 +0.3
587,157 + MMP_RS03105 0.89 -0.6
587,228 - -2.1
587,349 + -0.2
587,352 + -1.0
587,352 + -1.1
587,352 + -0.3
587,396 + -2.1
587,398 - -3.1
587,398 - -2.6
587,399 + -2.8
587,403 - -3.3
587,404 + -2.1
587,425 + MMP_RS03110 0.13 -3.2
587,435 - MMP_RS03110 0.14 -4.0
587,440 + MMP_RS03110 0.15 -2.8
587,487 + MMP_RS03110 0.22 -2.0
587,551 - MMP_RS03110 0.31 -3.7
587,573 + MMP_RS03110 0.34 -2.3
587,662 - MMP_RS03110 0.47 -1.2
587,662 - MMP_RS03110 0.47 -2.3
587,663 + MMP_RS03110 0.47 -1.6
587,732 + MMP_RS03110 0.57 -3.4
587,803 + MMP_RS03110 0.67 -2.8
587,864 - MMP_RS03110 0.76 -1.9
587,920 - MMP_RS03110 0.84 -2.7
587,939 - MMP_RS03110 0.87 -2.1
587,961 + MMP_RS03110 0.90 -1.7
588,047 + -3.3
588,065 + -3.8
588,101 - -0.3
588,101 - -1.7
588,101 - -2.2
588,101 - -1.4
588,102 + -1.2
588,102 + -1.4
588,104 - -2.3
588,106 - -1.0
588,107 + -1.4
588,110 - -0.8
588,111 + -2.2
588,116 - -4.3
588,128 - -1.9
588,128 - -3.0
588,128 - -1.4
588,129 + -1.3
588,130 - -1.2
588,130 - -2.7
588,130 - -1.6
588,131 + -1.8
588,131 + -2.0
588,132 - -1.7
588,132 - -0.4
588,132 - -1.3
588,132 - -3.5
588,132 - -0.2
588,132 - -1.4
588,132 - -3.0
588,132 - +0.4
588,132 - -0.5
588,132 - -0.7
588,132 - -0.1
588,133 + -0.4
588,133 + -0.2
588,135 - MMP_RS03115 0.10 -1.1
588,135 - MMP_RS03115 0.10 +0.9
588,135 - MMP_RS03115 0.10 -1.1
588,135 - MMP_RS03115 0.10 -1.8
588,135 - MMP_RS03115 0.10 -2.4
588,135 - MMP_RS03115 0.10 -0.8
588,135 - MMP_RS03115 0.10 -0.4
588,135 - MMP_RS03115 0.10 -1.4
588,136 + MMP_RS03115 0.10 -1.2
588,136 + MMP_RS03115 0.10 -1.2
588,136 + MMP_RS03115 0.10 -1.2
588,136 + MMP_RS03115 0.10 -1.1
588,136 + MMP_RS03115 0.10 -2.7
588,136 + MMP_RS03115 0.10 -1.1
588,136 + MMP_RS03115 0.10 -2.3
588,136 + MMP_RS03115 0.10 -1.5
588,137 - MMP_RS03115 0.10 -0.5
588,137 - MMP_RS03115 0.10 +0.0
588,138 + MMP_RS03115 0.11 -0.9
588,139 - MMP_RS03115 0.11 -0.4
588,140 + MMP_RS03115 0.11 -0.1
588,202 - MMP_RS03115 0.20 -0.3
588,203 + MMP_RS03115 0.20 -0.0
588,209 + MMP_RS03115 0.21 -1.0
588,220 - MMP_RS03115 0.23 -0.8
588,225 + MMP_RS03115 0.24 -0.4
588,253 - MMP_RS03115 0.28 -1.3
588,253 - MMP_RS03115 0.28 -0.2
588,254 + MMP_RS03115 0.28 -0.9
588,272 + MMP_RS03115 0.31 -0.3
588,289 - MMP_RS03115 0.33 -0.4
588,290 + MMP_RS03115 0.34 -1.2
588,341 + MMP_RS03115 0.41 -0.7
588,344 - MMP_RS03115 0.42 -0.2
588,493 - MMP_RS03115 0.64 -1.0
588,498 + MMP_RS03115 0.65 -1.0
588,498 + MMP_RS03115 0.65 -0.7
588,524 - MMP_RS03115 0.69 -0.9
588,524 - MMP_RS03115 0.69 +0.0
588,524 - MMP_RS03115 0.69 -1.3
588,525 + MMP_RS03115 0.69 +0.1
588,525 + MMP_RS03115 0.69 -0.1
588,525 + MMP_RS03115 0.69 -0.9
588,538 + MMP_RS03115 0.71 -0.1
588,554 + MMP_RS03115 0.74 -0.8
588,581 + MMP_RS03115 0.78 -0.4
588,689 - -1.3
588,712 + -0.9
588,717 + -0.4
588,727 - -0.6
588,728 + +0.7
588,880 + MMP_RS03120 0.78 -2.4
588,880 + MMP_RS03120 0.78 -0.1
588,888 - MMP_RS03120 0.82 +0.5
588,891 - MMP_RS03120 0.84 +0.0
588,938 - -0.3
588,993 - -0.9
589,069 - MMP_RS03125 0.19 -0.9
589,129 - MMP_RS03125 0.27 +0.5
589,284 + MMP_RS03125 0.47 -0.0
589,295 - MMP_RS03125 0.48 -1.1
589,322 + MMP_RS03125 0.52 +0.2
589,596 + MMP_RS03125 0.86 -0.4
589,683 + +0.1

Or see this region's nucleotide sequence