Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides MMP_RS00945 and MMP_RS00950 are separated by 112 nucleotides MMP_RS00950 and MMP_RS00955 are separated by 21 nucleotides MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.412 kb on - strand, within MMP_RS00940 at 176.429 kb on + strand, within MMP_RS00940 at 176.435 kb on + strand, within MMP_RS00940 at 176.460 kb on - strand, within MMP_RS00940 at 176.652 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.657 kb on + strand, within MMP_RS00940 at 176.743 kb on - strand at 176.749 kb on - strand at 176.750 kb on + strand at 176.757 kb on - strand at 176.834 kb on + strand at 177.212 kb on - strand, within MMP_RS00945 at 177.239 kb on - strand at 177.247 kb on - strand at 177.317 kb on - strand at 177.353 kb on - strand at 177.354 kb on + strand at 177.737 kb on + strand, within MMP_RS00950 at 178.056 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.181 kb on + strand, within MMP_RS00950 at 178.242 kb on + strand, within MMP_RS00950 at 178.270 kb on - strand, within MMP_RS00950 at 178.417 kb on - strand at 178.449 kb on + strand at 178.451 kb on + strand at 178.472 kb on + strand at 178.604 kb on - strand at 178.670 kb on + strand, within MMP_RS00955 at 178.758 kb on - strand, within MMP_RS00955 at 179.123 kb on - strand, within MMP_RS00955 at 179.124 kb on + strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 176,412 - MMP_RS00940 0.60 +0.4 176,429 + MMP_RS00940 0.62 +0.4 176,435 + MMP_RS00940 0.62 -0.0 176,460 - MMP_RS00940 0.65 -0.3 176,652 - MMP_RS00940 0.85 -0.0 176,656 - MMP_RS00940 0.85 +0.1 176,656 - MMP_RS00940 0.85 +0.1 176,657 + MMP_RS00940 0.85 -0.5 176,743 - +1.1 176,749 - +0.5 176,750 + +0.6 176,757 - +0.4 176,834 + +0.6 177,212 - MMP_RS00945 0.90 +0.1 177,239 - +0.8 177,247 - +0.1 177,317 - -0.5 177,353 - -0.8 177,354 + +0.5 177,737 + MMP_RS00950 0.32 -0.8 178,056 - MMP_RS00950 0.61 -0.9 178,117 - MMP_RS00950 0.66 -0.1 178,117 - MMP_RS00950 0.66 -2.6 178,117 - MMP_RS00950 0.66 -0.7 178,181 + MMP_RS00950 0.72 -0.7 178,242 + MMP_RS00950 0.77 -0.5 178,270 - MMP_RS00950 0.80 -0.8 178,417 - -0.1 178,449 + -0.5 178,451 + +0.2 178,472 + +0.1 178,604 - -0.3 178,670 + MMP_RS00955 0.17 +0.3 178,758 - MMP_RS00955 0.28 +0.0 179,123 - MMP_RS00955 0.70 +1.2 179,124 + MMP_RS00955 0.70 +1.8 179,126 - MMP_RS00955 0.71 -0.4 179,126 - MMP_RS00955 0.71 -0.9 179,143 - MMP_RS00955 0.72 +0.1 179,143 - MMP_RS00955 0.72 +0.4 179,144 + MMP_RS00955 0.73 +0.5 179,144 + MMP_RS00955 0.73 -1.0 179,144 + MMP_RS00955 0.73 +0.7 179,144 + MMP_RS00955 0.73 +0.4 179,146 + MMP_RS00955 0.73 -0.2 179,229 - MMP_RS00955 0.83 +0.4 179,231 - MMP_RS00955 0.83 +0.0 179,231 - MMP_RS00955 0.83 +0.4 179,232 + MMP_RS00955 0.83 -0.5 179,232 + MMP_RS00955 0.83 +0.6 179,285 + MMP_RS00955 0.89 -1.2 179,386 - -0.6 179,438 + -0.3
Or see this region's nucleotide sequence