Strain Fitness in Pantoea sp. MT58 around IAI47_19550

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
138,076	+		IAI47_19545	0.26	+1.0
138,077	-		IAI47_19545	0.26	-1.1
138,116	-		IAI47_19545	0.29	+1.0
138,116	-		IAI47_19545	0.29	+1.8
138,145	+		IAI47_19545	0.32	+0.1
138,145	+		IAI47_19545	0.32	+2.1
138,145	+		IAI47_19545	0.32	+1.5
138,175	+		IAI47_19545	0.34	+0.6
138,175	+		IAI47_19545	0.34	+0.7
138,176	-		IAI47_19545	0.34	+0.2
138,176	-		IAI47_19545	0.34	+0.5
138,188	-		IAI47_19545	0.35	-0.3
138,190	+		IAI47_19545	0.35	+2.7
138,191	-		IAI47_19545	0.35	+1.0
138,191	-		IAI47_19545	0.35	+0.6
138,191	-		IAI47_19545	0.35	-1.8
138,204	+		IAI47_19545	0.36	-0.9
138,205	-		IAI47_19545	0.37	+0.7
138,251	-		IAI47_19545	0.40	-0.7
138,375	+		IAI47_19545	0.51	+1.7
138,375	+		IAI47_19545	0.51	+0.7
138,376	-		IAI47_19545	0.51	-1.3
138,387	+		IAI47_19545	0.52	-0.1
138,387	+		IAI47_19545	0.52	-1.1
138,387	+		IAI47_19545	0.52	-0.9
138,387	+		IAI47_19545	0.52	-2.3
138,388	-		IAI47_19545	0.52	-0.6
138,388	-		IAI47_19545	0.52	-2.2
138,388	-		IAI47_19545	0.52	-1.5
138,391	+		IAI47_19545	0.52	+0.9
138,391	+		IAI47_19545	0.52	+1.2
138,392	-		IAI47_19545	0.52	+1.4
138,408	+		IAI47_19545	0.53	-0.1
138,408	+		IAI47_19545	0.53	-0.4
138,408	+		IAI47_19545	0.53	+1.5
138,408	+		IAI47_19545	0.53	-1.8
138,423	+		IAI47_19545	0.55	+0.4
138,505	-		IAI47_19545	0.62	-0.9
138,518	+		IAI47_19545	0.63	-0.5
138,519	-		IAI47_19545	0.63	-0.3
138,519	-		IAI47_19545	0.63	-1.2
138,552	+		IAI47_19545	0.65	-1.6
138,552	+		IAI47_19545	0.65	-1.2
138,553	-		IAI47_19545	0.66	+1.7
138,602	+		IAI47_19545	0.70	-1.2
138,616	+		IAI47_19545	0.71	+0.3
138,616	+		IAI47_19545	0.71	+0.7
138,617	-		IAI47_19545	0.71	-0.4
138,746	+		IAI47_19545	0.82	-1.2
138,746	+		IAI47_19545	0.82	-2.9
138,747	-		IAI47_19545	0.82	+0.2
138,754	+		IAI47_19545	0.82	+2.2
138,754	+		IAI47_19545	0.82	-0.5
138,755	-		IAI47_19545	0.82	-0.3
138,755	-		IAI47_19545	0.82	+1.4
138,755	-		IAI47_19545	0.82	-0.0
138,755	-		IAI47_19545	0.82	-1.6
138,755	-		IAI47_19545	0.82	-1.3
138,755	-		IAI47_19545	0.82	-2.2
138,755	-		IAI47_19545	0.82	+0.7
138,802	+		IAI47_19545	0.86	-0.3
138,802	+		IAI47_19545	0.86	-0.3
138,802	+		IAI47_19545	0.86	-0.3
138,803	-		IAI47_19545	0.86	+2.7
138,803	-		IAI47_19545	0.86	+0.7
138,803	-		IAI47_19545	0.86	+2.2
138,819	+		IAI47_19545	0.88	-0.9
138,819	+		IAI47_19545	0.88	-1.5
138,819	+		IAI47_19545	0.88	-0.1
138,819	+		IAI47_19545	0.88	+0.7
138,819	+		IAI47_19545	0.88	-1.5
138,820	-		IAI47_19545	0.88	-2.4
138,820	-		IAI47_19545	0.88	-0.3
138,867	-				-1.1
138,867	-				+0.7
138,873	-				+0.8
138,873	-				+1.3
138,874	+				+0.7
138,874	+				+0.6
138,875	-				-1.5
138,892	-				-0.3
138,924	+				+1.3
139,031	+				-0.3
139,032	+				-0.3
139,037	-				-0.4
139,037	-				-2.8
139,039	-				-0.9
139,066	+		IAI47_19550	0.16	-0.2
139,129	+		IAI47_19550	0.45	-2.5
139,129	+		IAI47_19550	0.45	+3.5
139,222	+		IAI47_19550	0.88	+0.5
139,235	+				+2.3
139,235	+				-1.5
139,252	+				+1.1
139,252	+				+1.7
139,253	-				-1.1
139,253	-				-2.7
139,404	+				-1.9
139,404	+				+1.3
139,405	-				+3.3
139,448	+		IAI47_19555	0.10	+1.1
139,448	+		IAI47_19555	0.10	+0.1
139,448	+		IAI47_19555	0.10	+2.5
139,448	+		IAI47_19555	0.10	-0.2
139,449	-		IAI47_19555	0.10	+0.1
139,449	-		IAI47_19555	0.10	-1.0
139,449	-		IAI47_19555	0.10	-0.6
139,449	-		IAI47_19555	0.10	+2.9
139,562	-		IAI47_19555	0.22	+0.3
139,562	-		IAI47_19555	0.22	+1.7
139,562	-		IAI47_19555	0.22	+0.5
139,612	-		IAI47_19555	0.28	+1.7
139,654	+		IAI47_19555	0.32	+0.3
139,654	+		IAI47_19555	0.32	+0.5
139,655	-		IAI47_19555	0.33	-0.0
139,670	+		IAI47_19555	0.34	-1.6
139,670	+		IAI47_19555	0.34	+0.7
139,670	+		IAI47_19555	0.34	-3.4
139,670	+		IAI47_19555	0.34	-1.1
139,670	+		IAI47_19555	0.34	+2.1
139,671	-		IAI47_19555	0.34	-0.3
139,671	-		IAI47_19555	0.34	-2.4
139,671	-		IAI47_19555	0.34	-0.3
139,671	-		IAI47_19555	0.34	+0.6
139,671	-		IAI47_19555	0.34	+1.3
139,671	-		IAI47_19555	0.34	-0.5
139,671	-		IAI47_19555	0.34	+1.9
139,671	-		IAI47_19555	0.34	-1.9
139,671	-		IAI47_19555	0.34	+2.0
139,700	+		IAI47_19555	0.37	-2.8
139,700	+		IAI47_19555	0.37	+1.5
139,701	-		IAI47_19555	0.38	-0.6
139,711	+		IAI47_19555	0.39	-0.5
139,711	+		IAI47_19555	0.39	+1.3
139,711	+		IAI47_19555	0.39	-1.5
139,712	-		IAI47_19555	0.39	+0.2
139,731	-		IAI47_19555	0.41	-0.2
139,731	-		IAI47_19555	0.41	+1.0
139,758	+		IAI47_19555	0.44	+1.2
139,759	-		IAI47_19555	0.44	+0.5
139,759	-		IAI47_19555	0.44	+0.7
139,761	+		IAI47_19555	0.44	-0.6
139,762	-		IAI47_19555	0.44	+0.1
139,762	-		IAI47_19555	0.44	-1.0
139,762	-		IAI47_19555	0.44	+3.8
139,762	-		IAI47_19555	0.44	-2.4
139,762	-		IAI47_19555	0.44	+0.1
139,838	+		IAI47_19555	0.53	-1.9
139,838	+		IAI47_19555	0.53	-1.9
139,838	+		IAI47_19555	0.53	+2.0
139,857	+		IAI47_19555	0.55	-1.3
139,910	+		IAI47_19555	0.60	+0.5
139,910	+		IAI47_19555	0.60	+0.2
139,910	+		IAI47_19555	0.60	-1.8
139,910	+		IAI47_19555	0.60	-2.4
139,910	+		IAI47_19555	0.60	-1.8
139,911	-		IAI47_19555	0.60	+0.1
139,911	-		IAI47_19555	0.60	+2.4
139,966	+		IAI47_19555	0.66	-1.2
139,966	+		IAI47_19555	0.66	+2.0
139,966	+		IAI47_19555	0.66	+0.3
139,966	+		IAI47_19555	0.66	-0.0
139,966	+		IAI47_19555	0.66	-1.1
139,966	+		IAI47_19555	0.66	-0.0
139,967	-		IAI47_19555	0.67	-0.1
139,967	-		IAI47_19555	0.67	+0.1
139,967	-		IAI47_19555	0.67	-1.1
139,967	-		IAI47_19555	0.67	+0.2
139,967	-		IAI47_19555	0.67	+1.7
139,967	-		IAI47_19555	0.67	-2.1
139,970	+		IAI47_19555	0.67	-1.9
139,970	+		IAI47_19555	0.67	-2.1
139,970	+		IAI47_19555	0.67	+0.8
139,971	-		IAI47_19555	0.67	-0.9
139,971	-		IAI47_19555	0.67	-0.5
139,985	+		IAI47_19555	0.69	-1.1
139,985	+		IAI47_19555	0.69	+0.0
139,985	+		IAI47_19555	0.69	+2.0
139,985	+		IAI47_19555	0.69	-1.6
139,986	-		IAI47_19555	0.69	-0.6
139,986	-		IAI47_19555	0.69	-0.1
139,986	-		IAI47_19555	0.69	-2.1
140,040	-		IAI47_19555	0.75	-0.1
140,040	-		IAI47_19555	0.75	-0.4
140,124	-		IAI47_19555	0.84	-0.6
140,128	-		IAI47_19555	0.84	-1.2
140,168	+		IAI47_19555	0.88	+1.0
140,168	+		IAI47_19555	0.88	+3.7
140,168	+		IAI47_19555	0.88	-1.3
140,169	-		IAI47_19555	0.89	+1.4
140,169	-		IAI47_19555	0.89	-2.9
140,169	-		IAI47_19555	0.89	-1.4
140,169	-		IAI47_19555	0.89	+2.4
140,169	-		IAI47_19555	0.89	-2.8
140,173	-		IAI47_19555	0.89	+0.7
140,189	+				-0.9
140,213	+				-1.1
140,214	-				-1.2
140,220	-				-0.2