Strain Fitness in Pantoea sp. MT58 around IAI47_15010

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,164,890	+		IAI47_15000	0.15	+0.1
3,164,891	-		IAI47_15000	0.15	-0.5
3,164,891	-		IAI47_15000	0.15	+0.9
3,164,891	-		IAI47_15000	0.15	+0.2
3,164,891	-		IAI47_15000	0.15	+0.7
3,164,894	+		IAI47_15000	0.15	-0.1
3,164,894	+		IAI47_15000	0.15	-1.2
3,164,895	-		IAI47_15000	0.15	-0.4
3,164,909	-		IAI47_15000	0.18	-2.7
3,164,969	+		IAI47_15000	0.27	+0.7
3,164,978	+		IAI47_15000	0.28	+0.4
3,165,001	-		IAI47_15000	0.32	-1.2
3,165,017	+		IAI47_15000	0.34	+0.4
3,165,017	+		IAI47_15000	0.34	-0.0
3,165,017	+		IAI47_15000	0.34	+0.2
3,165,017	+		IAI47_15000	0.34	+1.0
3,165,018	-		IAI47_15000	0.34	+0.6
3,165,018	-		IAI47_15000	0.34	+1.0
3,165,018	-		IAI47_15000	0.34	+0.5
3,165,019	+		IAI47_15000	0.34	+0.8
3,165,020	-		IAI47_15000	0.35	+0.6
3,165,020	-		IAI47_15000	0.35	-0.0
3,165,020	-		IAI47_15000	0.35	+0.1
3,165,020	-		IAI47_15000	0.35	+0.7
3,165,041	-		IAI47_15000	0.38	-1.8
3,165,082	+		IAI47_15000	0.44	+1.2
3,165,083	-		IAI47_15000	0.44	-0.4
3,165,083	-		IAI47_15000	0.44	+2.0
3,165,083	-		IAI47_15000	0.44	-1.6
3,165,128	-		IAI47_15000	0.51	-1.0
3,165,128	-		IAI47_15000	0.51	+1.8
3,165,128	-		IAI47_15000	0.51	-0.9
3,165,128	-		IAI47_15000	0.51	-0.7
3,165,139	+		IAI47_15000	0.53	+0.8
3,165,140	-		IAI47_15000	0.53	+1.3
3,165,250	+		IAI47_15000	0.70	+0.6
3,165,250	+		IAI47_15000	0.70	+2.0
3,165,250	+		IAI47_15000	0.70	+0.5
3,165,251	-		IAI47_15000	0.70	+0.3
3,165,251	-		IAI47_15000	0.70	-0.4
3,165,251	-		IAI47_15000	0.70	-1.4
3,165,251	-		IAI47_15000	0.70	+0.4
3,165,279	+		IAI47_15000	0.74	+0.7
3,165,286	+		IAI47_15000	0.75	-0.1
3,165,286	+		IAI47_15000	0.75	-0.0
3,165,286	+		IAI47_15000	0.75	+0.7
3,165,286	+		IAI47_15000	0.75	-0.2
3,165,286	+		IAI47_15000	0.75	-0.0
3,165,287	-		IAI47_15000	0.76	+1.1
3,165,293	+		IAI47_15000	0.76	+1.8
3,165,293	+		IAI47_15000	0.76	-0.1
3,165,293	+		IAI47_15000	0.76	+0.2
3,165,293	+		IAI47_15000	0.76	-0.2
3,165,294	-		IAI47_15000	0.77	+1.2
3,165,294	-		IAI47_15000	0.77	-0.3
3,165,294	-		IAI47_15000	0.77	+0.3
3,165,294	-		IAI47_15000	0.77	-2.7
3,165,294	-		IAI47_15000	0.77	-0.4
3,165,294	-		IAI47_15000	0.77	+1.1
3,165,294	-		IAI47_15000	0.77	+1.1
3,165,294	-		IAI47_15000	0.77	-0.5
3,165,294	-		IAI47_15000	0.77	-1.0
3,165,347	+		IAI47_15000	0.85	+2.0
3,165,347	+		IAI47_15000	0.85	+2.1
3,165,347	+		IAI47_15000	0.85	-0.4
3,165,347	+		IAI47_15000	0.85	+0.3
3,165,403	+				-0.4
3,165,431	+				-1.7
3,165,432	-				+0.2
3,165,467	+				-0.4
3,165,467	+				-0.5
3,165,468	-				+0.7
3,165,468	-				-0.9
3,165,508	+				-2.1
3,165,508	+				+2.2
3,165,508	+				+1.4
3,165,508	+				+1.2
3,165,508	+				+0.3
3,165,508	+				+1.4
3,165,508	+				-1.3
3,165,508	+				-1.7
3,165,509	-				-1.7
3,165,509	-				+0.5
3,165,509	-				-0.3
3,165,509	-				-1.4
3,165,509	-				-2.3
3,165,509	-				-1.9
3,165,509	-				-0.8
3,165,509	-				-0.0
3,165,545	+				+1.4
3,165,547	+				+0.7
3,165,548	-				-1.0
3,165,568	-				+0.1
3,165,615	+				-2.5
3,165,615	+				-0.6
3,165,615	+				+1.0
3,165,615	+				-0.7
3,165,615	+				-0.2
3,165,615	+				+0.2
3,165,615	+				-0.4
3,165,615	+				-0.5
3,165,615	+				-0.6
3,165,615	+				-0.5
3,165,615	+				+0.0
3,165,615	+				+1.7
3,165,615	+				-1.4
3,165,616	-				-1.0
3,165,616	-				-0.1
3,165,616	-				+1.6
3,165,616	-				-1.0
3,165,616	-				+1.0
3,165,616	-				-2.0
3,165,616	-				-0.1
3,165,623	+				-1.7
3,165,639	-		IAI47_15005	0.13	+1.5
3,165,695	-		IAI47_15005	0.46	-0.2
3,165,738	+		IAI47_15005	0.71	+0.5
3,165,739	-		IAI47_15005	0.72	-2.0
3,165,804	+				-0.0
3,165,817	+				+2.0
3,165,817	+				-0.4
3,165,817	+				+0.2
3,165,817	+				-0.1
3,165,817	+				+0.1
3,165,817	+				+1.7
3,165,817	+				-0.1
3,165,817	+				+0.6
3,165,818	-				+2.0
3,165,818	-				+0.6
3,165,839	-				+2.2
3,165,851	-				-0.5
3,165,851	-				-2.7
3,165,851	-				+0.5
3,165,876	-				+0.4
3,165,926	+		IAI47_15010	0.17	+0.4
3,165,926	+		IAI47_15010	0.17	+1.0
3,165,926	+		IAI47_15010	0.17	+0.8
3,165,926	+		IAI47_15010	0.17	+1.0
3,165,927	-		IAI47_15010	0.18	-0.0
3,165,927	-		IAI47_15010	0.18	+1.6
3,165,928	+		IAI47_15010	0.18	-1.0
3,165,928	+		IAI47_15010	0.18	+1.6
3,165,928	+		IAI47_15010	0.18	-1.6
3,165,928	+		IAI47_15010	0.18	-0.3
3,165,928	+		IAI47_15010	0.18	-0.3
3,165,928	+		IAI47_15010	0.18	-1.6
3,165,928	+		IAI47_15010	0.18	-1.4
3,165,928	+		IAI47_15010	0.18	-1.4
3,165,929	-		IAI47_15010	0.18	-1.3
3,165,929	-		IAI47_15010	0.18	-0.1
3,165,929	-		IAI47_15010	0.18	-0.8
3,165,929	-		IAI47_15010	0.18	-2.6
3,165,929	-		IAI47_15010	0.18	-1.8
3,165,931	+		IAI47_15010	0.19	+2.0
3,165,931	+		IAI47_15010	0.19	-0.0
3,165,931	+		IAI47_15010	0.19	-0.4
3,165,932	-		IAI47_15010	0.20	-0.8
3,165,932	-		IAI47_15010	0.20	+0.8
3,165,932	-		IAI47_15010	0.20	-0.2
3,165,932	-		IAI47_15010	0.20	-0.0
3,165,940	+		IAI47_15010	0.23	+2.1
3,165,941	-		IAI47_15010	0.24	-1.4
3,165,941	-		IAI47_15010	0.24	-0.5
3,165,991	+		IAI47_15010	0.45	-0.4
3,165,991	+		IAI47_15010	0.45	-1.0
3,165,992	-		IAI47_15010	0.45	-1.3
3,165,992	-		IAI47_15010	0.45	-1.4
3,165,992	-		IAI47_15010	0.45	-1.2
3,166,012	+		IAI47_15010	0.54	-1.5
3,166,012	+		IAI47_15010	0.54	-1.6
3,166,013	-		IAI47_15010	0.54	-0.6
3,166,013	-		IAI47_15010	0.54	-1.1
3,166,013	-		IAI47_15010	0.54	+0.8
3,166,015	+		IAI47_15010	0.55	+1.0
3,166,016	-		IAI47_15010	0.56	-0.4
3,166,061	-		IAI47_15010	0.75	-0.7
3,166,089	+		IAI47_15010	0.87	-0.6
3,166,122	-				+0.9
3,166,122	-				-1.0
3,166,130	+				+0.7
3,166,289	+				-0.1
3,166,290	-				+0.3
3,166,290	-				-0.4
3,166,314	+				-1.1
3,166,368	-				-0.9
3,166,402	+				+1.6
3,166,402	+				+0.2
3,166,419	+				-0.8
3,166,419	+				-0.6
3,166,420	-				+0.0
3,166,424	+				-1.0
3,166,424	+				+2.0
3,166,424	+				-0.8
3,166,424	+				+0.2
3,166,424	+				+0.3
3,166,424	+				+0.5
3,166,424	+				+0.2
3,166,425	-				+0.3
3,166,425	-				-0.6
3,166,425	-				-0.8
3,166,478	+				-1.2
3,166,479	-				-1.6
3,166,488	+				-0.6
3,166,536	+		IAI47_15015	0.17	-0.1
3,166,537	-		IAI47_15015	0.17	+0.6
3,166,542	+		IAI47_15015	0.19	-0.2
3,166,542	+		IAI47_15015	0.19	+1.5
3,166,542	+		IAI47_15015	0.19	+1.6
3,166,656	+		IAI47_15015	0.45	-1.4
3,166,656	+		IAI47_15015	0.45	-1.5
3,166,656	+		IAI47_15015	0.45	-1.2
3,166,656	+		IAI47_15015	0.45	+1.3
3,166,657	-				+2.0
3,166,711	-		IAI47_15015	0.58	-1.2
3,166,711	-		IAI47_15015	0.58	+0.2
3,166,711	-		IAI47_15015	0.58	+0.5
3,166,783	-		IAI47_15015	0.75	+0.8
3,166,783	-		IAI47_15015	0.75	+0.8
3,166,785	+		IAI47_15015	0.75	+0.2
3,166,785	+		IAI47_15015	0.75	+0.4
3,166,785	+		IAI47_15015	0.75	+3.2
3,166,785	+		IAI47_15015	0.75	-0.5
3,166,785	+		IAI47_15015	0.75	+2.3
3,166,785	+		IAI47_15015	0.75	-0.1
3,166,785	+		IAI47_15015	0.75	-0.8
3,166,786	-		IAI47_15015	0.76	-0.1
3,166,793	+		IAI47_15015	0.77	-1.0
3,166,793	+		IAI47_15015	0.77	+1.8
3,166,794	-		IAI47_15015	0.77	+0.3
3,166,794	-		IAI47_15015	0.77	-0.1
3,166,794	-		IAI47_15015	0.77	+0.0
3,166,794	-		IAI47_15015	0.77	-0.0
3,166,839	+		IAI47_15015	0.88	-0.4
3,166,840	-		IAI47_15015	0.88	-0.6
3,166,840	-		IAI47_15015	0.88	-0.2
3,166,840	-		IAI47_15015	0.88	-0.1
3,166,908	+				+1.5
3,166,908	+				+1.6
3,166,908	+				+0.1
3,166,909	-				-0.1
3,166,917	+				+1.7
3,166,917	+				-1.3
3,166,917	+				-1.4
3,166,917	+				-0.6
3,166,917	+				-1.6
3,166,917	+				-0.2
3,166,917	+				+0.5
3,166,918	-				-0.0
3,166,918	-				+0.2
3,166,918	-				+2.2
3,166,921	+				-1.6
3,166,921	+				+0.7
3,166,921	+				+2.2
3,166,921	+				-0.9
3,166,922	-				-3.2
3,166,922	-				+0.8
3,166,922	-				-1.9
3,166,922	-				+0.2
3,166,922	-				-0.9
3,166,923	+				-0.0
3,166,923	+				+1.0
3,166,923	+				-0.2
3,166,930	+				+0.7
3,166,930	+				-0.8
3,166,930	+				-1.5
3,166,930	+				+1.0
3,166,930	+				-0.8
3,166,930	+				+0.2
3,166,930	+				-2.4
3,166,930	+				-0.8
3,166,931	-				-2.2
3,166,931	-				+1.0
3,166,931	-				+4.7
3,166,931	-				-1.5
3,166,931	-				-1.6
3,166,931	-				-0.0
3,166,931	-				-0.0
3,166,931	-				-0.2
3,166,931	-				+0.5
3,166,931	-				-1.8
3,167,034	+				-0.8