Strain Fitness in Pantoea sp. MT58 around IAI47_12120

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,566,244	+				+0.9
2,566,244	+				+0.5
2,566,244	+				-1.1
2,566,244	+				-2.4
2,566,245	-				+1.4
2,566,245	-				-0.8
2,566,245	-				-0.6
2,566,245	-				-0.5
2,566,250	+				-1.5
2,566,250	+				+0.3
2,566,250	+				-3.3
2,566,250	+				-3.3
2,566,251	-				+0.1
2,566,251	-				-0.4
2,566,262	-				+0.8
2,566,262	-				-2.4
2,566,262	-				-0.7
2,566,292	+				+1.0
2,566,292	+				-2.2
2,566,292	+				+0.4
2,566,292	+				-1.7
2,566,292	+				-1.9
2,566,292	+				-0.5
2,566,293	-				+0.1
2,566,293	-				+0.5
2,566,293	-				-0.7
2,566,293	-				-1.6
2,566,293	-				-1.5
2,566,293	-				-2.7
2,566,293	-				-1.0
2,566,294	+				-0.2
2,566,294	+				-0.9
2,566,294	+				+1.6
2,566,294	+				+3.3
2,566,294	+				-0.3
2,566,294	+				-1.9
2,566,294	+				+1.4
2,566,295	-				+0.3
2,566,295	-				+1.2
2,566,295	-				+0.5
2,566,295	-				-0.1
2,566,315	-		IAI47_12115	0.11	-1.6
2,566,321	-		IAI47_12115	0.12	+0.3
2,566,321	-		IAI47_12115	0.12	-0.6
2,566,321	-		IAI47_12115	0.12	-1.2
2,566,321	-		IAI47_12115	0.12	+0.6
2,566,321	-		IAI47_12115	0.12	-2.1
2,566,349	+		IAI47_12115	0.14	+0.9
2,566,350	-		IAI47_12115	0.15	-2.5
2,566,351	+		IAI47_12115	0.15	-1.7
2,566,351	+		IAI47_12115	0.15	+0.5
2,566,351	+		IAI47_12115	0.15	-1.7
2,566,351	+		IAI47_12115	0.15	-2.8
2,566,351	+		IAI47_12115	0.15	+0.7
2,566,351	+		IAI47_12115	0.15	+0.7
2,566,352	-		IAI47_12115	0.15	+2.7
2,566,352	-		IAI47_12115	0.15	-0.8
2,566,352	-		IAI47_12115	0.15	-2.6
2,566,388	+		IAI47_12115	0.19	-2.5
2,566,388	+		IAI47_12115	0.19	-2.5
2,566,389	-		IAI47_12115	0.19	+0.7
2,566,439	+		IAI47_12115	0.24	+0.6
2,566,439	+		IAI47_12115	0.24	-0.7
2,566,440	-		IAI47_12115	0.24	-0.0
2,566,467	-		IAI47_12115	0.27	-1.1
2,566,472	+		IAI47_12115	0.27	+0.3
2,566,472	+		IAI47_12115	0.27	-2.5
2,566,472	+		IAI47_12115	0.27	+0.0
2,566,473	-		IAI47_12115	0.27	-1.6
2,566,473	-		IAI47_12115	0.27	-1.0
2,566,562	+		IAI47_12115	0.37	-0.7
2,566,562	+		IAI47_12115	0.37	+1.0
2,566,563	-		IAI47_12115	0.37	-2.0
2,566,563	-		IAI47_12115	0.37	-0.2
2,566,563	-		IAI47_12115	0.37	+0.6
2,566,626	-		IAI47_12115	0.43	+2.0
2,566,626	-		IAI47_12115	0.43	-1.9
2,566,626	-		IAI47_12115	0.43	-0.5
2,566,626	-		IAI47_12115	0.43	-0.0
2,566,626	-		IAI47_12115	0.43	+1.0
2,566,661	+		IAI47_12115	0.47	-1.3
2,566,661	+		IAI47_12115	0.47	-1.3
2,566,661	+		IAI47_12115	0.47	-1.2
2,566,662	-		IAI47_12115	0.47	+1.0
2,566,708	+		IAI47_12115	0.52	-0.1
2,566,709	-		IAI47_12115	0.52	-0.1
2,566,757	+		IAI47_12115	0.57	+1.3
2,566,757	+		IAI47_12115	0.57	+1.2
2,566,773	-		IAI47_12115	0.58	-0.1
2,566,773	-		IAI47_12115	0.58	+0.1
2,566,773	-		IAI47_12115	0.58	+0.0
2,566,775	-		IAI47_12115	0.59	-0.0
2,566,926	+		IAI47_12115	0.74	-1.0
2,566,940	+		IAI47_12115	0.76	+0.3
2,566,940	+		IAI47_12115	0.76	+1.4
2,566,940	+		IAI47_12115	0.76	+2.2
2,566,941	-		IAI47_12115	0.76	-0.5
2,566,941	-		IAI47_12115	0.76	+0.4
2,566,943	+		IAI47_12115	0.76	+1.3
2,566,943	+		IAI47_12115	0.76	-0.5
2,566,943	+		IAI47_12115	0.76	-2.5
2,566,943	+		IAI47_12115	0.76	+1.0
2,566,943	+		IAI47_12115	0.76	+0.7
2,566,944	-		IAI47_12115	0.76	-2.3
2,566,944	-		IAI47_12115	0.76	-0.3
2,566,944	-		IAI47_12115	0.76	-3.6
2,566,944	-		IAI47_12115	0.76	-1.3
2,566,944	-		IAI47_12115	0.76	-1.1
2,566,997	+		IAI47_12115	0.82	+0.0
2,567,063	+		IAI47_12115	0.88	-0.1
2,567,064	-		IAI47_12115	0.89	-1.0
2,567,064	-		IAI47_12115	0.89	-2.5
2,567,067	+		IAI47_12115	0.89	+0.6
2,567,068	-		IAI47_12115	0.89	-1.3
2,567,068	-		IAI47_12115	0.89	-1.0
2,567,157	-				-2.2
2,567,162	+				-0.1
2,567,177	+				+1.9
2,567,177	+				-1.5
2,567,177	+				+0.4
2,567,177	+				+0.9
2,567,177	+				-0.1
2,567,178	-				-1.0
2,567,178	-				+0.6
2,567,178	-				-0.2
2,567,178	-				+1.2
2,567,178	-				+0.0
2,567,178	-				-2.5
2,567,197	+				-1.7
2,567,212	+				-1.2
2,567,213	-				-2.5
2,567,213	-				-0.1
2,567,213	-				+1.9
2,567,248	+				-0.5
2,567,254	+				+0.1
2,567,254	+				-0.8
2,567,254	+				+0.0
2,567,255	-				+1.1
2,567,255	-				+0.9
2,567,255	-				-1.5
2,567,255	-				+0.1
2,567,255	-				-1.2
2,567,255	-				+0.7
2,567,255	-				-1.5
2,567,256	+				-0.6
2,567,256	+				+0.0
2,567,256	+				-1.4
2,567,256	+				+0.0
2,567,256	+				-2.9
2,567,256	+				+0.4
2,567,256	+				-1.3
2,567,256	+				-1.6
2,567,256	+				-2.1
2,567,256	+				+1.0
2,567,257	-				-1.5
2,567,257	-				-1.7
2,567,257	-				-2.2
2,567,257	-				-2.0
2,567,257	-				+0.5
2,567,257	-				-0.8
2,567,257	-				+0.3
2,567,257	-				+0.0
2,567,257	-				-0.6
2,567,257	-				-1.1
2,567,257	-				+0.2
2,567,257	-				-0.2
2,567,257	-				+1.5
2,567,259	+				-2.9
2,567,259	+				+1.3
2,567,259	+				-0.5
2,567,259	+				-1.7
2,567,260	-				+0.6
2,567,260	-				-0.0
2,567,260	-				-0.7
2,567,260	-				+0.3
2,567,260	-				-3.4
2,567,260	-				-2.1
2,567,268	+				-1.9
2,567,268	+				-1.3
2,567,269	-				-0.3
2,567,269	-				-2.1
2,567,272	+				-0.6
2,567,273	-				-0.1
2,567,273	-				-2.1
2,567,273	-				+1.0
2,567,273	-				+0.1
2,567,287	-				-1.9
2,567,303	+				-0.8
2,567,303	+				+0.9
2,567,303	+				-0.0
2,567,360	-		IAI47_12120	0.10	+0.3
2,567,360	-		IAI47_12120	0.10	+3.3
2,567,402	-		IAI47_12120	0.13	-1.5
2,567,402	-		IAI47_12120	0.13	-1.7
2,567,411	-		IAI47_12120	0.13	-0.4
2,567,418	+		IAI47_12120	0.14	+0.1
2,567,489	-		IAI47_12120	0.18	-0.9
2,567,606	-		IAI47_12120	0.25	-2.8
2,567,683	+		IAI47_12120	0.30	-0.5
2,567,737	+		IAI47_12120	0.33	-0.7
2,567,738	-		IAI47_12120	0.33	-1.4
2,567,758	+		IAI47_12120	0.34	-0.1
2,567,758	+		IAI47_12120	0.34	+0.4
2,567,759	-		IAI47_12120	0.35	+2.6
2,567,759	-		IAI47_12120	0.35	-1.1
2,567,760	+		IAI47_12120	0.35	+0.6
2,567,760	+		IAI47_12120	0.35	-1.3
2,567,760	+		IAI47_12120	0.35	+0.6
2,567,760	+		IAI47_12120	0.35	-0.8
2,567,760	+		IAI47_12120	0.35	+1.4
2,567,760	+		IAI47_12120	0.35	-2.4
2,567,760	+		IAI47_12120	0.35	-0.0
2,567,760	+		IAI47_12120	0.35	+0.4
2,567,761	-		IAI47_12120	0.35	-1.4
2,567,761	-		IAI47_12120	0.35	+0.9
2,567,761	-		IAI47_12120	0.35	+0.4
2,567,827	+		IAI47_12120	0.39	-0.6
2,567,837	+		IAI47_12120	0.39	-1.2
2,567,837	+		IAI47_12120	0.39	-2.1
2,567,838	-		IAI47_12120	0.39	+1.6
2,567,838	-		IAI47_12120	0.39	-1.1
2,567,838	-		IAI47_12120	0.39	+1.3
2,567,838	-		IAI47_12120	0.39	+1.0
2,567,858	-		IAI47_12120	0.41	-2.1
2,567,888	-		IAI47_12120	0.42	-1.0
2,567,917	+		IAI47_12120	0.44	-0.1
2,567,918	-		IAI47_12120	0.44	-0.1
2,567,942	+		IAI47_12120	0.46	-1.7
2,568,066	+		IAI47_12120	0.53	-0.7
2,568,073	+		IAI47_12120	0.54	+0.2
2,568,073	+		IAI47_12120	0.54	-0.5
2,568,074	-		IAI47_12120	0.54	-3.2
2,568,076	+		IAI47_12120	0.54	-1.0
2,568,076	+		IAI47_12120	0.54	-0.7
2,568,077	-		IAI47_12120	0.54	+0.6
2,568,077	-		IAI47_12120	0.54	-0.5
2,568,077	-		IAI47_12120	0.54	+2.4
2,568,137	+		IAI47_12120	0.57	-2.4
2,568,138	-		IAI47_12120	0.58	-0.5
2,568,206	+		IAI47_12120	0.62	+0.2
2,568,206	+		IAI47_12120	0.62	+2.3
2,568,206	+		IAI47_12120	0.62	+0.3
2,568,207	-		IAI47_12120	0.62	+0.4
2,568,207	-		IAI47_12120	0.62	-0.7
2,568,207	-		IAI47_12120	0.62	+0.8
2,568,207	-		IAI47_12120	0.62	+1.6
2,568,207	-		IAI47_12120	0.62	+0.9
2,568,211	+		IAI47_12120	0.62	+0.3
2,568,211	+		IAI47_12120	0.62	-2.4
2,568,212	-		IAI47_12120	0.62	-1.4
2,568,212	-		IAI47_12120	0.62	+0.3
2,568,221	-		IAI47_12120	0.63	+0.6
2,568,242	-		IAI47_12120	0.64	-0.9
2,568,256	+		IAI47_12120	0.65	-2.2
2,568,257	-		IAI47_12120	0.65	+1.7
2,568,257	-		IAI47_12120	0.65	-1.0
2,568,278	-		IAI47_12120	0.66	+0.5
2,568,322	+		IAI47_12120	0.69	-1.3
2,568,322	+		IAI47_12120	0.69	-1.1
2,568,379	+		IAI47_12120	0.72	-3.1
2,568,379	+		IAI47_12120	0.72	+1.7
2,568,380	-		IAI47_12120	0.72	+0.2
2,568,380	-		IAI47_12120	0.72	-3.0
2,568,380	-		IAI47_12120	0.72	+1.2
2,568,390	+		IAI47_12120	0.73	-0.6
2,568,390	+		IAI47_12120	0.73	-2.2
2,568,493	+		IAI47_12120	0.79	-0.4
2,568,494	-		IAI47_12120	0.79	-3.1
2,568,494	-		IAI47_12120	0.79	-1.6
2,568,496	+		IAI47_12120	0.79	+1.1
2,568,496	+		IAI47_12120	0.79	-0.7
2,568,496	+		IAI47_12120	0.79	-1.5
2,568,497	-		IAI47_12120	0.79	+0.5
2,568,497	-		IAI47_12120	0.79	-2.1
2,568,497	-		IAI47_12120	0.79	-1.0
2,568,594	+		IAI47_12120	0.85	-0.0
2,568,595	-		IAI47_12120	0.85	-0.4
2,568,595	-		IAI47_12120	0.85	-3.4
2,568,614	+		IAI47_12120	0.86	-1.3
2,568,628	+		IAI47_12120	0.87	-3.0
2,568,628	+		IAI47_12120	0.87	-1.3
2,568,628	+		IAI47_12120	0.87	-0.0
2,568,628	+		IAI47_12120	0.87	-0.7
2,568,629	-		IAI47_12120	0.87	-2.1
2,568,629	-		IAI47_12120	0.87	-2.1
2,568,629	-		IAI47_12120	0.87	-0.6
2,568,639	+		IAI47_12120	0.88	-2.6
2,568,639	+		IAI47_12120	0.88	-2.1
2,568,639	+		IAI47_12120	0.88	-1.9
2,568,640	-		IAI47_12120	0.88	-0.2
2,568,640	-		IAI47_12120	0.88	-1.9
2,568,640	-		IAI47_12120	0.88	-1.1
2,568,640	-		IAI47_12120	0.88	-1.4
2,568,640	-		IAI47_12120	0.88	-1.9
2,568,640	-		IAI47_12120	0.88	+0.4
2,568,650	+		IAI47_12120	0.89	+1.9
2,568,651	-		IAI47_12120	0.89	-1.8
2,568,651	-		IAI47_12120	0.89	+1.3
2,568,662	-		IAI47_12120	0.89	+1.9
2,568,662	-		IAI47_12120	0.89	-1.2
2,568,678	+				-1.3
2,568,679	-				-2.7
2,568,681	+				-1.0
2,568,681	+				+0.1
2,568,681	+				-1.9
2,568,681	+				-1.7
2,568,681	+				-1.0
2,568,681	+				+0.2
2,568,681	+				-2.7
2,568,681	+				+0.3
2,568,681	+				+0.3
2,568,681	+				-1.5
2,568,681	+				-2.1
2,568,681	+				-0.5
2,568,681	+				-2.1
2,568,681	+				-0.5
2,568,682	-				-3.2
2,568,682	-				-1.4
2,568,682	-				-2.9
2,568,682	-				+0.1
2,568,682	-				-0.7
2,568,682	-				-2.2
2,568,701	-				-0.3
2,568,764	-				-0.1
2,568,769	+				+0.3
2,568,769	+				+0.9
2,568,823	+				+0.8
2,568,824	-				-0.1
2,568,824	-				+1.4
2,568,824	-				-0.1
2,568,827	+				-2.1
2,568,827	+				+0.3
2,568,828	-				-0.7
2,568,828	-				+0.6
2,568,828	-				-1.6
2,568,828	-				-2.8
2,568,828	-				+0.4
2,568,828	-				-1.4
2,568,828	-				-0.2
2,568,828	-				-2.9
2,568,828	-				+0.2
2,568,828	-				-1.6
2,568,849	+				-1.1
2,568,849	+				-2.3
2,568,849	+				-1.6
2,568,849	+				+0.9
2,568,850	-				-2.1
2,568,850	-				+0.1
2,568,850	-				+2.3
2,568,850	-				+1.7
2,568,850	-				-0.5
2,568,850	-				+0.5
2,568,915	+				-1.4
2,568,915	+				-2.3
2,568,916	-				-0.1
2,568,917	+				-2.4
2,568,917	+				-0.7
2,568,917	+				+2.9
2,568,918	-				-0.4
2,568,918	-				+0.3
2,568,918	-				+0.4
2,568,938	+				-0.3
2,568,938	+				-1.1
2,568,938	+				-1.9
2,568,939	-				-2.1
2,568,939	-				+2.3
2,568,939	-				-1.1
2,568,939	-				-1.7
2,568,939	-				-1.0
2,568,939	-				-1.0
2,568,980	-				+0.6
2,568,980	-				-1.3
2,568,990	+				+2.3
2,568,991	-				-0.7
2,569,016	-				-1.0
2,569,016	-				-0.7
2,569,056	+				-0.1
2,569,056	+				+0.0
2,569,056	+				+1.3
2,569,056	+				+0.7
2,569,057	-				-1.9
2,569,088	+		IAI47_12125	0.13	-1.4
2,569,137	+		IAI47_12125	0.18	-0.5
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2,569,168	-		IAI47_12125	0.21	-2.9
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2,569,188	+		IAI47_12125	0.23	-0.4
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