Strain Fitness in Pantoea sp. MT58 around IAI47_07845

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,660,604	-		IAI47_07835	0.89	+0.8
1,660,671	+				+1.6
1,660,671	+				+0.5
1,660,674	+				-1.3
1,660,674	+				-1.0
1,660,674	+				-1.3
1,660,674	+				-2.9
1,660,675	-				-0.1
1,660,675	-				+0.6
1,660,675	-				+1.6
1,660,675	-				+0.1
1,660,677	+				-1.1
1,660,687	+				-0.0
1,660,688	-				+1.1
1,660,688	-				+0.8
1,660,688	-				-2.4
1,660,708	+				+2.8
1,660,709	-				+0.8
1,660,709	-				+2.0
1,660,716	-				+0.3
1,660,753	+				+1.2
1,660,753	+				+1.0
1,660,753	+				+2.5
1,660,754	-				+1.3
1,660,754	-				+1.7
1,660,754	-				-0.0
1,660,778	+				+0.8
1,660,779	-				+1.6
1,660,789	+				-0.2
1,660,841	+		IAI47_07840	0.13	-2.4
1,660,841	+		IAI47_07840	0.13	+2.0
1,660,842	-		IAI47_07840	0.13	-1.5
1,660,842	-		IAI47_07840	0.13	-2.3
1,660,842	-		IAI47_07840	0.13	-1.0
1,660,881	+		IAI47_07840	0.19	-0.3
1,660,881	+		IAI47_07840	0.19	+1.8
1,660,881	+		IAI47_07840	0.19	-1.0
1,660,966	+		IAI47_07840	0.31	-1.3
1,660,967	-		IAI47_07840	0.31	-1.0
1,660,967	-		IAI47_07840	0.31	-1.0
1,660,975	+		IAI47_07840	0.32	+0.1
1,660,976	-		IAI47_07840	0.32	-1.6
1,661,005	+		IAI47_07840	0.37	+0.7
1,661,005	+		IAI47_07840	0.37	-0.3
1,661,006	-		IAI47_07840	0.37	-0.4
1,661,012	+		IAI47_07840	0.38	+3.4
1,661,013	-		IAI47_07840	0.38	-0.5
1,661,013	-		IAI47_07840	0.38	-2.4
1,661,026	+		IAI47_07840	0.40	+0.2
1,661,026	+		IAI47_07840	0.40	+1.3
1,661,034	+		IAI47_07840	0.41	-2.9
1,661,034	+		IAI47_07840	0.41	-0.8
1,661,035	-		IAI47_07840	0.41	-1.2
1,661,035	-		IAI47_07840	0.41	+0.1
1,661,035	-		IAI47_07840	0.41	+1.3
1,661,056	+		IAI47_07840	0.44	-1.5
1,661,056	+		IAI47_07840	0.44	+0.1
1,661,056	+		IAI47_07840	0.44	-0.4
1,661,056	+		IAI47_07840	0.44	+0.2
1,661,056	+		IAI47_07840	0.44	+1.2
1,661,056	+		IAI47_07840	0.44	-1.3
1,661,056	+		IAI47_07840	0.44	-1.0
1,661,056	+		IAI47_07840	0.44	+0.2
1,661,056	+		IAI47_07840	0.44	-0.9
1,661,056	+		IAI47_07840	0.44	+0.5
1,661,056	+		IAI47_07840	0.44	-0.3
1,661,056	+		IAI47_07840	0.44	+2.0
1,661,056	+		IAI47_07840	0.44	+0.0
1,661,056	+		IAI47_07840	0.44	-2.2
1,661,056	+		IAI47_07840	0.44	+0.6
1,661,056	+		IAI47_07840	0.44	+1.5
1,661,056	+		IAI47_07840	0.44	-1.0
1,661,056	+		IAI47_07840	0.44	+1.7
1,661,056	+		IAI47_07840	0.44	+0.9
1,661,056	+		IAI47_07840	0.44	-1.6
1,661,056	+		IAI47_07840	0.44	+0.8
1,661,056	+		IAI47_07840	0.44	-1.3
1,661,057	-		IAI47_07840	0.44	-1.2
1,661,057	-		IAI47_07840	0.44	+3.6
1,661,057	-		IAI47_07840	0.44	-0.3
1,661,057	-		IAI47_07840	0.44	+0.2
1,661,057	-		IAI47_07840	0.44	+1.4
1,661,057	-		IAI47_07840	0.44	-0.5
1,661,057	-		IAI47_07840	0.44	-0.0
1,661,057	-		IAI47_07840	0.44	-1.5
1,661,057	-		IAI47_07840	0.44	-0.9
1,661,057	-		IAI47_07840	0.44	-2.4
1,661,057	-		IAI47_07840	0.44	-3.0
1,661,057	-		IAI47_07840	0.44	-0.8
1,661,057	-		IAI47_07840	0.44	-0.9
1,661,057	-		IAI47_07840	0.44	-0.8
1,661,063	+		IAI47_07840	0.45	+0.5
1,661,063	+		IAI47_07840	0.45	+2.9
1,661,064	-		IAI47_07840	0.45	-2.1
1,661,064	-		IAI47_07840	0.45	+2.0
1,661,128	+		IAI47_07840	0.55	-0.2
1,661,410	+				-0.2
1,661,410	+				-0.3
1,661,411	-				+1.1
1,661,417	+				-0.1
1,661,417	+				+0.8
1,661,417	+				-1.0
1,661,418	-				+0.2
1,661,418	-				-2.9
1,661,446	+				-0.9
1,661,447	-				+1.1
1,661,584	+				+1.2
1,661,602	+				-0.4
1,661,637	+		IAI47_07845	0.10	-3.1
1,661,637	+		IAI47_07845	0.10	+0.3
1,661,637	+		IAI47_07845	0.10	+0.8
1,661,637	+		IAI47_07845	0.10	-1.2
1,661,637	+		IAI47_07845	0.10	-1.6
1,661,638	-		IAI47_07845	0.10	+0.2
1,661,638	-		IAI47_07845	0.10	-2.0
1,661,638	-		IAI47_07845	0.10	-2.2
1,661,648	-		IAI47_07845	0.11	+1.6
1,661,699	-		IAI47_07845	0.17	-1.8
1,661,708	+		IAI47_07845	0.18	-1.9
1,661,708	+		IAI47_07845	0.18	+0.9
1,661,709	-		IAI47_07845	0.18	-0.8
1,661,709	-		IAI47_07845	0.18	+0.8
1,661,713	+		IAI47_07845	0.19	+0.9
1,661,713	+		IAI47_07845	0.19	-0.8
1,661,713	+		IAI47_07845	0.19	-0.6
1,661,713	+		IAI47_07845	0.19	+0.2
1,661,713	+		IAI47_07845	0.19	+1.5
1,661,713	+		IAI47_07845	0.19	+1.1
1,661,714	-		IAI47_07845	0.19	-0.8
1,661,714	-		IAI47_07845	0.19	-2.0
1,661,714	-		IAI47_07845	0.19	-0.5
1,661,714	-		IAI47_07845	0.19	+1.5
1,661,714	-		IAI47_07845	0.19	+0.7
1,661,714	-		IAI47_07845	0.19	-0.8
1,661,714	-		IAI47_07845	0.19	-0.7
1,661,714	-		IAI47_07845	0.19	+1.4
1,661,734	-		IAI47_07845	0.21	-0.2
1,661,754	+		IAI47_07845	0.23	-1.6
1,661,755	-		IAI47_07845	0.24	+0.6
1,661,842	+		IAI47_07845	0.34	-1.0
1,661,843	-		IAI47_07845	0.34	-0.1
1,661,859	+		IAI47_07845	0.36	+1.2
1,661,859	+		IAI47_07845	0.36	-1.8
1,661,859	+		IAI47_07845	0.36	-0.5
1,661,859	+		IAI47_07845	0.36	-0.4
1,661,859	+		IAI47_07845	0.36	+0.5
1,661,859	+		IAI47_07845	0.36	+1.0
1,661,859	+		IAI47_07845	0.36	-1.3
1,661,859	-		IAI47_07845	0.36	+0.1
1,661,860	-		IAI47_07845	0.36	-2.5
1,661,860	-		IAI47_07845	0.36	+1.0
1,661,860	-		IAI47_07845	0.36	+0.4
1,661,860	-		IAI47_07845	0.36	-1.7
1,661,860	-		IAI47_07845	0.36	+0.8
1,661,866	+		IAI47_07845	0.36	-0.8
1,661,866	+		IAI47_07845	0.36	+0.7
1,661,866	+		IAI47_07845	0.36	+1.6
1,661,867	-		IAI47_07845	0.36	+0.6
1,661,867	-		IAI47_07845	0.36	-2.3
1,661,867	-		IAI47_07845	0.36	+1.9
1,661,867	-		IAI47_07845	0.36	-0.3
1,661,904	+		IAI47_07845	0.41	-1.3
1,661,933	+		IAI47_07845	0.44	+0.2
1,661,981	+		IAI47_07845	0.49	+1.3
1,661,982	-		IAI47_07845	0.50	+1.8
1,662,128	+		IAI47_07845	0.66	-1.0
1,662,128	+		IAI47_07845	0.66	-1.3
1,662,128	+		IAI47_07845	0.66	-1.5
1,662,129	-		IAI47_07845	0.66	+0.6
1,662,129	-		IAI47_07845	0.66	-1.2
1,662,129	-		IAI47_07845	0.66	+0.4
1,662,129	-		IAI47_07845	0.66	+1.4
1,662,129	-		IAI47_07845	0.66	+0.1
1,662,139	+		IAI47_07845	0.68	+0.2
1,662,140	-		IAI47_07845	0.68	-1.5
1,662,174	+		IAI47_07845	0.72	+1.8
1,662,174	+		IAI47_07845	0.72	-1.8
1,662,174	+		IAI47_07845	0.72	+0.2
1,662,175	-		IAI47_07845	0.72	-2.6
1,662,175	-		IAI47_07845	0.72	-0.5
1,662,200	-		IAI47_07845	0.75	+1.7
1,662,255	+		IAI47_07845	0.81	-0.8
1,662,302	+		IAI47_07845	0.86	-0.9
1,662,431	+				-0.3
1,662,449	+				-1.0
1,662,450	-				-1.8
1,662,497	+				-0.5
1,662,497	+				+0.5
1,662,550	-				-2.5
1,662,550	-				+0.9
1,662,571	+				+0.6
1,662,572	-				+0.7
1,662,610	+				-1.8
1,662,610	+				+1.1
1,662,611	-				+2.4
1,662,687	+		IAI47_07850	0.14	+0.7
1,662,804	+		IAI47_07850	0.30	+1.4
1,662,804	+		IAI47_07850	0.30	+0.8
1,662,804	+		IAI47_07850	0.30	+0.3
1,662,982	+		IAI47_07850	0.54	-0.8
1,662,982	+		IAI47_07850	0.54	-2.0
1,662,982	+		IAI47_07850	0.54	+3.1
1,662,983	-		IAI47_07850	0.54	-0.7
1,662,983	-		IAI47_07850	0.54	+0.3
1,662,983	-		IAI47_07850	0.54	+0.0
1,662,983	-		IAI47_07850	0.54	+0.1
1,663,034	+		IAI47_07850	0.61	-0.3
1,663,034	+		IAI47_07850	0.61	+0.2
1,663,035	-		IAI47_07850	0.61	+1.4
1,663,035	-		IAI47_07850	0.61	+1.0
1,663,035	-		IAI47_07850	0.61	+0.6
1,663,035	-		IAI47_07850	0.61	+0.5
1,663,035	-		IAI47_07850	0.61	-1.8
1,663,036	+		IAI47_07850	0.61	-1.9
1,663,036	+		IAI47_07850	0.61	+0.4
1,663,036	+		IAI47_07850	0.61	-1.2
1,663,037	-		IAI47_07850	0.61	-1.3
1,663,037	-		IAI47_07850	0.61	-1.0
1,663,037	-		IAI47_07850	0.61	-0.7
1,663,037	-		IAI47_07850	0.61	-1.0
1,663,037	-		IAI47_07850	0.61	-2.9
1,663,060	+		IAI47_07850	0.65	-1.0
1,663,061	-		IAI47_07850	0.65	-0.7
1,663,061	-		IAI47_07850	0.65	+2.0
1,663,110	+		IAI47_07850	0.71	-1.3
1,663,110	+		IAI47_07850	0.71	+0.7
1,663,111	-		IAI47_07850	0.72	+1.2
1,663,121	+		IAI47_07850	0.73	-2.2
1,663,122	-		IAI47_07850	0.73	+0.1
1,663,122	-		IAI47_07850	0.73	-1.9
1,663,216	+		IAI47_07850	0.86	-1.0
1,663,216	+		IAI47_07850	0.86	-1.5
1,663,217	-		IAI47_07850	0.86	+1.1
1,663,217	-		IAI47_07850	0.86	-0.8
1,663,295	+				+1.0
1,663,307	+				+1.1
1,663,307	+				+0.5
1,663,307	+				+1.4
1,663,308	-				+0.4
1,663,308	-				+0.9
1,663,417	-				+0.2
1,663,417	-				-1.5
1,663,417	-				+0.4
1,663,417	-				-0.3