Strain Fitness in Pantoea sp. MT58 around IAI47_06650

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,383,785	-		IAI47_06640	0.50	-0.8
1,383,785	-		IAI47_06640	0.50	-2.3
1,383,792	+		IAI47_06640	0.51	+0.4
1,383,792	+		IAI47_06640	0.51	+1.0
1,383,793	-		IAI47_06640	0.52	-1.2
1,383,801	+		IAI47_06640	0.53	+0.2
1,383,802	-		IAI47_06640	0.53	+2.3
1,383,823	+		IAI47_06640	0.57	-1.2
1,383,823	+		IAI47_06640	0.57	-1.9
1,383,823	+		IAI47_06640	0.57	+0.8
1,383,824	-		IAI47_06640	0.57	+0.4
1,383,824	-		IAI47_06640	0.57	-1.9
1,383,824	-		IAI47_06640	0.57	+0.3
1,383,824	-		IAI47_06640	0.57	-2.6
1,383,825	+		IAI47_06640	0.57	+1.1
1,383,825	+		IAI47_06640	0.57	-0.3
1,383,826	-		IAI47_06640	0.57	-1.5
1,383,839	+		IAI47_06640	0.60	-0.0
1,383,839	+		IAI47_06640	0.60	+1.3
1,383,839	+		IAI47_06640	0.60	+5.9
1,383,839	+		IAI47_06640	0.60	+0.1
1,383,839	+		IAI47_06640	0.60	-0.2
1,383,839	+		IAI47_06640	0.60	+1.6
1,383,839	+		IAI47_06640	0.60	-1.0
1,383,840	-		IAI47_06640	0.60	+0.4
1,383,840	-		IAI47_06640	0.60	+0.1
1,383,840	-		IAI47_06640	0.60	+0.9
1,383,840	-		IAI47_06640	0.60	-0.5
1,383,840	-		IAI47_06640	0.60	+0.5
1,383,840	-		IAI47_06640	0.60	-0.0
1,383,840	-		IAI47_06640	0.60	+1.4
1,383,840	-		IAI47_06640	0.60	-0.1
1,383,840	-		IAI47_06640	0.60	+0.8
1,383,840	-		IAI47_06640	0.60	-1.4
1,383,840	-		IAI47_06640	0.60	+1.1
1,383,840	-		IAI47_06640	0.60	+1.5
1,383,840	-		IAI47_06640	0.60	+1.9
1,383,840	-		IAI47_06640	0.60	+1.3
1,383,840	-		IAI47_06640	0.60	+1.7
1,383,841	+		IAI47_06640	0.60	-0.1
1,383,841	+		IAI47_06640	0.60	-0.8
1,383,841	+		IAI47_06640	0.60	-0.4
1,383,841	+		IAI47_06640	0.60	+1.2
1,383,841	+		IAI47_06640	0.60	+1.3
1,383,841	+		IAI47_06640	0.60	+0.7
1,383,842	-		IAI47_06640	0.60	+0.0
1,383,842	-		IAI47_06640	0.60	-1.8
1,383,842	-		IAI47_06640	0.60	+0.0
1,383,842	-		IAI47_06640	0.60	-0.6
1,383,842	-		IAI47_06640	0.60	+1.8
1,383,842	-		IAI47_06640	0.60	-0.0
1,383,842	-		IAI47_06640	0.60	+2.0
1,383,842	-		IAI47_06640	0.60	-0.3
1,383,843	+		IAI47_06640	0.60	+0.7
1,383,843	+		IAI47_06640	0.60	+0.9
1,383,843	+		IAI47_06640	0.60	+1.2
1,383,843	+		IAI47_06640	0.60	-0.9
1,383,843	+		IAI47_06640	0.60	+1.5
1,383,843	+		IAI47_06640	0.60	+1.1
1,383,843	+		IAI47_06640	0.60	+0.2
1,383,843	+		IAI47_06640	0.60	-0.9
1,383,843	+		IAI47_06640	0.60	-0.6
1,383,843	+		IAI47_06640	0.60	-1.3
1,383,843	+		IAI47_06640	0.60	-1.8
1,383,843	+		IAI47_06640	0.60	-1.1
1,383,843	+		IAI47_06640	0.60	+0.2
1,383,843	+		IAI47_06640	0.60	-0.7
1,383,844	-		IAI47_06640	0.61	-0.0
1,383,844	-		IAI47_06640	0.61	-0.2
1,383,844	-		IAI47_06640	0.61	-1.5
1,383,844	-		IAI47_06640	0.61	-1.8
1,383,844	-		IAI47_06640	0.61	+0.0
1,383,844	-		IAI47_06640	0.61	+1.3
1,383,844	-		IAI47_06640	0.61	-2.1
1,383,886	+		IAI47_06640	0.68	-0.0
1,383,886	+		IAI47_06640	0.68	-2.2
1,383,887	-		IAI47_06640	0.68	-2.6
1,383,952	+		IAI47_06640	0.79	+2.0
1,383,953	-		IAI47_06640	0.80	-1.2
1,383,954	+		IAI47_06640	0.80	+0.2
1,383,955	-		IAI47_06640	0.80	-1.7
1,383,955	-		IAI47_06640	0.80	-0.0
1,384,018	+				-0.4
1,384,019	-				-1.2
1,384,082	+				-0.8
1,384,083	-				-1.5
1,384,083	-				+0.4
1,384,198	+				-2.0
1,384,198	+				+2.1
1,384,198	+				-0.3
1,384,199	-				+2.0
1,384,265	+		IAI47_06645	0.13	-0.6
1,384,265	+		IAI47_06645	0.13	+1.1
1,384,265	+		IAI47_06645	0.13	-1.3
1,384,265	+		IAI47_06645	0.13	-1.0
1,384,266	-		IAI47_06645	0.13	+2.9
1,384,348	+		IAI47_06645	0.45	+0.0
1,384,348	+		IAI47_06645	0.45	-0.7
1,384,348	+		IAI47_06645	0.45	-2.4
1,384,349	-		IAI47_06645	0.45	+1.2
1,384,349	-		IAI47_06645	0.45	-0.3
1,384,413	+		IAI47_06645	0.71	-1.0
1,384,413	+		IAI47_06645	0.71	+1.8
1,384,413	+		IAI47_06645	0.71	+2.6
1,384,413	+		IAI47_06645	0.71	-1.8
1,384,413	+		IAI47_06645	0.71	-1.4
1,384,413	+		IAI47_06645	0.71	+0.9
1,384,413	+		IAI47_06645	0.71	-1.0
1,384,414	-		IAI47_06645	0.71	+1.0
1,384,452	+		IAI47_06645	0.86	+1.3
1,384,452	+		IAI47_06645	0.86	+0.4
1,384,452	+		IAI47_06645	0.86	-1.7
1,384,452	+		IAI47_06645	0.86	+0.9
1,384,452	+		IAI47_06645	0.86	+0.2
1,384,452	+		IAI47_06645	0.86	-2.2
1,384,452	+		IAI47_06645	0.86	-0.0
1,384,453	-		IAI47_06645	0.86	+0.4
1,384,453	-		IAI47_06645	0.86	+0.6
1,384,453	-		IAI47_06645	0.86	+0.4
1,384,453	-		IAI47_06645	0.86	-0.3
1,384,453	-		IAI47_06645	0.86	+0.1
1,384,453	-		IAI47_06645	0.86	+0.6
1,384,456	+		IAI47_06645	0.87	+0.5
1,384,456	+		IAI47_06645	0.87	+1.1
1,384,456	+		IAI47_06645	0.87	+3.8
1,384,456	+		IAI47_06645	0.87	-0.6
1,384,456	+		IAI47_06645	0.87	+1.7
1,384,456	+		IAI47_06645	0.87	-0.0
1,384,456	+		IAI47_06645	0.87	+3.3
1,384,457	-		IAI47_06645	0.88	-1.7
1,384,457	-		IAI47_06645	0.88	-1.5
1,384,457	-		IAI47_06645	0.88	-0.5
1,384,457	-		IAI47_06645	0.88	+1.0
1,384,457	-		IAI47_06645	0.88	-0.2
1,384,457	-		IAI47_06645	0.88	+1.3
1,384,457	-		IAI47_06645	0.88	-0.8
1,384,457	-		IAI47_06645	0.88	-0.0
1,384,562	-				+0.4
1,384,590	+				-0.0
1,384,680	-				+5.0
1,384,759	+				+2.1
1,384,760	-				+2.4
1,384,760	-				+1.4
1,384,760	-				+4.7
1,384,859	-				-0.8
1,384,874	+		IAI47_06650	0.10	+0.7
1,384,874	+		IAI47_06650	0.10	-0.6
1,384,875	-		IAI47_06650	0.10	-0.0
1,384,875	-		IAI47_06650	0.10	-0.4
1,384,875	-		IAI47_06650	0.10	-0.5
1,384,875	-		IAI47_06650	0.10	-0.4
1,384,957	+		IAI47_06650	0.17	+1.0
1,385,039	+		IAI47_06650	0.25	+1.3
1,385,039	+		IAI47_06650	0.25	+2.7
1,385,039	+		IAI47_06650	0.25	+1.0
1,385,039	+		IAI47_06650	0.25	+1.6
1,385,039	+		IAI47_06650	0.25	+0.8
1,385,039	+		IAI47_06650	0.25	-1.9
1,385,039	+		IAI47_06650	0.25	+2.7
1,385,039	+		IAI47_06650	0.25	+2.2
1,385,039	+		IAI47_06650	0.25	+0.8
1,385,040	-		IAI47_06650	0.25	+0.7
1,385,040	-		IAI47_06650	0.25	+0.7
1,385,040	-		IAI47_06650	0.25	+2.3
1,385,040	-		IAI47_06650	0.25	-0.0
1,385,040	-		IAI47_06650	0.25	-1.2
1,385,040	-		IAI47_06650	0.25	+1.7
1,385,085	+		IAI47_06650	0.29	+1.8
1,385,086	-		IAI47_06650	0.29	+2.6
1,385,217	+		IAI47_06650	0.40	+0.7
1,385,217	+		IAI47_06650	0.40	-1.2
1,385,217	+		IAI47_06650	0.40	+0.2
1,385,218	-		IAI47_06650	0.40	+0.9
1,385,221	+		IAI47_06650	0.41	+0.8
1,385,221	+		IAI47_06650	0.41	+0.6
1,385,221	+		IAI47_06650	0.41	+0.3
1,385,221	+		IAI47_06650	0.41	+1.2
1,385,222	-		IAI47_06650	0.41	+2.8
1,385,309	+		IAI47_06650	0.49	-0.0
1,385,309	+		IAI47_06650	0.49	-0.2
1,385,309	+		IAI47_06650	0.49	+0.8
1,385,310	-		IAI47_06650	0.49	+1.4
1,385,457	+		IAI47_06650	0.62	+0.4
1,385,457	+		IAI47_06650	0.62	+0.5
1,385,457	+		IAI47_06650	0.62	+1.2
1,385,504	+		IAI47_06650	0.66	-1.7
1,385,504	+		IAI47_06650	0.66	-0.9
1,385,504	+		IAI47_06650	0.66	+1.6
1,385,517	+		IAI47_06650	0.67	-0.8
1,385,517	+		IAI47_06650	0.67	-0.4
1,385,548	+		IAI47_06650	0.70	-0.8
1,385,548	+		IAI47_06650	0.70	+0.6
1,385,570	+		IAI47_06650	0.72	+0.1
1,385,571	-		IAI47_06650	0.72	+1.8
1,385,571	-		IAI47_06650	0.72	+2.0
1,385,630	-		IAI47_06650	0.77	-0.8
1,385,682	+		IAI47_06650	0.82	-0.9
1,385,682	+		IAI47_06650	0.82	+1.5
1,385,683	-		IAI47_06650	0.82	+0.4
1,385,735	-		IAI47_06650	0.86	+2.3
1,385,735	-		IAI47_06650	0.86	-1.0
1,385,926	+				-0.6
1,385,927	-				+1.2
1,385,927	-				+2.1
1,385,927	-				+0.1
1,385,941	+				+1.5
1,385,941	+				-0.9
1,385,941	+				+3.4
1,385,941	+				+1.1
1,385,941	+				+1.2
1,385,942	-				-0.0
1,385,942	-				+1.3
1,385,942	-				+3.6
1,385,944	-				+5.1
1,385,944	-				+1.6
1,386,024	+		IAI47_06655	0.15	+0.1
1,386,024	+		IAI47_06655	0.15	+1.8
1,386,024	+		IAI47_06655	0.15	+4.0
1,386,024	+		IAI47_06655	0.15	-0.0
1,386,159	+		IAI47_06655	0.29	+2.0
1,386,162	+		IAI47_06655	0.29	+3.3
1,386,163	-		IAI47_06655	0.29	+2.5
1,386,250	-		IAI47_06655	0.39	+0.7
1,386,360	+		IAI47_06655	0.50	+1.1
1,386,361	-		IAI47_06655	0.50	+1.7
1,386,606	+		IAI47_06655	0.77	+1.3
1,386,607	-		IAI47_06655	0.77	+2.6
1,386,673	+		IAI47_06655	0.84	-0.0
1,386,774	+				+4.8
1,386,774	+				+2.8
1,386,774	+				+1.3
1,386,775	-				+0.7
1,386,809	+				-0.6
1,386,809	+				-0.2
1,386,809	+				+0.7
1,386,809	+				-0.1
1,386,810	-				+1.3
1,386,810	-				+0.8
1,386,810	-				+0.3
1,386,841	-				+0.7
1,386,841	-				+0.7
1,386,859	+				-1.9
1,386,860	-				+0.3
1,386,868	+				+1.1
1,386,868	+				-0.4
1,386,869	-				-1.0
1,386,869	-				+1.4
1,386,869	-				-0.2
1,386,890	+				+1.8
1,386,890	+				+2.0
1,386,890	+				+1.4
1,386,890	+				+0.2
1,386,890	+				+0.1
1,386,890	+				-1.0
1,386,890	+				-2.4
1,386,890	+				-0.1