Strain Fitness in Pantoea sp. MT58 around IAI47_06535

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,358,913	+				+1.2
1,358,913	+				-1.0
1,358,924	-				-0.0
1,359,008	+		IAI47_06530	0.15	-2.3
1,359,009	-		IAI47_06530	0.16	-1.4
1,359,009	-		IAI47_06530	0.16	+1.0
1,359,009	-		IAI47_06530	0.16	-1.4
1,359,018	+		IAI47_06530	0.17	-2.4
1,359,018	+		IAI47_06530	0.17	-2.8
1,359,018	+		IAI47_06530	0.17	+1.7
1,359,058	+		IAI47_06530	0.23	+1.2
1,359,059	-		IAI47_06530	0.23	+0.8
1,359,141	-		IAI47_06530	0.36	-1.2
1,359,155	-		IAI47_06530	0.38	+0.4
1,359,244	+		IAI47_06530	0.52	-0.8
1,359,245	-		IAI47_06530	0.52	+0.5
1,359,245	-		IAI47_06530	0.52	+0.2
1,359,265	+		IAI47_06530	0.55	+1.3
1,359,265	+		IAI47_06530	0.55	-2.1
1,359,266	-		IAI47_06530	0.56	-1.5
1,359,273	-		IAI47_06530	0.57	+1.7
1,359,273	-		IAI47_06530	0.57	+1.7
1,359,307	+		IAI47_06530	0.62	+0.8
1,359,308	-		IAI47_06530	0.62	-2.3
1,359,308	-		IAI47_06530	0.62	+0.5
1,359,430	+		IAI47_06530	0.81	+1.2
1,359,431	-		IAI47_06530	0.81	+1.0
1,359,431	-		IAI47_06530	0.81	+0.3
1,359,431	-		IAI47_06530	0.81	+0.1
1,359,431	-		IAI47_06530	0.81	+0.5
1,359,431	-		IAI47_06530	0.81	-0.0
1,359,431	-		IAI47_06530	0.81	-0.2
1,359,464	+		IAI47_06530	0.86	+2.6
1,359,465	-		IAI47_06530	0.87	+1.0
1,359,465	-		IAI47_06530	0.87	+1.9
1,359,484	+		IAI47_06530	0.90	-0.0
1,359,484	+		IAI47_06530	0.90	+1.6
1,359,485	-		IAI47_06530	0.90	-1.2
1,359,521	+				+0.5
1,359,522	-				-0.2
1,359,522	-				+0.0
1,359,522	-				-0.8
1,359,522	-				+1.0
1,359,523	+				+0.4
1,359,523	+				+0.7
1,359,523	+				+0.4
1,359,524	-				-0.5
1,359,556	+				+1.5
1,359,556	+				+1.1
1,359,581	+				+0.4
1,359,585	+				+0.0
1,359,586	-				-0.0
1,359,609	+				+2.8
1,359,657	+				+1.0
1,359,657	+				-0.4
1,359,657	+				+3.1
1,359,658	-				+0.6
1,359,658	-				-1.3
1,359,658	-				+0.2
1,359,691	+				+2.2
1,359,692	-				+0.4
1,359,717	+				+1.4
1,359,718	-				+1.1
1,359,752	-				-1.8
1,359,925	+		IAI47_06535	0.17	+2.1
1,360,000	+		IAI47_06535	0.21	+0.4
1,360,001	-		IAI47_06535	0.21	-0.8
1,360,001	-		IAI47_06535	0.21	-0.4
1,360,041	+		IAI47_06535	0.24	+0.9
1,360,042	-		IAI47_06535	0.24	-0.2
1,360,042	-		IAI47_06535	0.24	+0.8
1,360,067	+		IAI47_06535	0.25	+0.2
1,360,067	+		IAI47_06535	0.25	+0.0
1,360,067	+		IAI47_06535	0.25	+2.0
1,360,067	+		IAI47_06535	0.25	-1.9
1,360,067	+		IAI47_06535	0.25	+1.0
1,360,067	+		IAI47_06535	0.25	+0.4
1,360,067	+		IAI47_06535	0.25	+0.4
1,360,067	+		IAI47_06535	0.25	+0.7
1,360,068	-		IAI47_06535	0.25	+2.3
1,360,068	-		IAI47_06535	0.25	-0.1
1,360,068	-		IAI47_06535	0.25	+1.2
1,360,068	-		IAI47_06535	0.25	+0.7
1,360,068	-		IAI47_06535	0.25	-0.8
1,360,068	-		IAI47_06535	0.25	+0.6
1,360,068	-		IAI47_06535	0.25	-1.8
1,360,068	-		IAI47_06535	0.25	+1.2
1,360,203	-		IAI47_06535	0.34	+0.6
1,360,211	+		IAI47_06535	0.34	-0.4
1,360,212	-		IAI47_06535	0.34	-1.5
1,360,212	-		IAI47_06535	0.34	-1.0
1,360,234	+		IAI47_06535	0.36	+0.0
1,360,234	+		IAI47_06535	0.36	-0.7
1,360,242	+		IAI47_06535	0.36	-1.4
1,360,243	-		IAI47_06535	0.36	+1.4
1,360,243	-		IAI47_06535	0.36	-1.6
1,360,249	+		IAI47_06535	0.36	+1.6
1,360,274	+		IAI47_06535	0.38	-0.0
1,360,275	-		IAI47_06535	0.38	+0.2
1,360,275	-		IAI47_06535	0.38	-0.4
1,360,275	-		IAI47_06535	0.38	-1.1
1,360,286	+		IAI47_06535	0.39	-2.0
1,360,287	-		IAI47_06535	0.39	+2.4
1,360,318	+		IAI47_06535	0.41	-2.1
1,360,318	+		IAI47_06535	0.41	+0.2
1,360,319	-		IAI47_06535	0.41	-0.0
1,360,333	+		IAI47_06535	0.42	+1.5
1,360,333	+		IAI47_06535	0.42	+0.6
1,360,333	+		IAI47_06535	0.42	+1.1
1,360,333	+		IAI47_06535	0.42	-0.2
1,360,334	-		IAI47_06535	0.42	+1.8
1,360,334	-		IAI47_06535	0.42	+1.5
1,360,337	+		IAI47_06535	0.42	+1.3
1,360,337	+		IAI47_06535	0.42	-2.0
1,360,338	-		IAI47_06535	0.42	+2.0
1,360,338	-		IAI47_06535	0.42	+0.8
1,360,338	-		IAI47_06535	0.42	+1.0
1,360,338	-		IAI47_06535	0.42	+2.0
1,360,338	-		IAI47_06535	0.42	+2.2
1,360,340	-		IAI47_06535	0.42	-0.0
1,360,366	+		IAI47_06535	0.43	-1.2
1,360,366	+		IAI47_06535	0.43	+2.2
1,360,366	+		IAI47_06535	0.43	+1.6
1,360,366	+		IAI47_06535	0.43	-0.4
1,360,366	+		IAI47_06535	0.43	+0.0
1,360,367	-		IAI47_06535	0.44	+0.2
1,360,367	-		IAI47_06535	0.44	-2.5
1,360,408	+		IAI47_06535	0.46	-1.0
1,360,429	+		IAI47_06535	0.47	-0.2
1,360,429	+		IAI47_06535	0.47	+0.4
1,360,429	+		IAI47_06535	0.47	-0.0
1,360,430	-		IAI47_06535	0.47	-2.3
1,360,430	-		IAI47_06535	0.47	-1.2
1,360,430	-		IAI47_06535	0.47	-0.1
1,360,430	-		IAI47_06535	0.47	+0.7
1,360,430	-		IAI47_06535	0.47	+0.7
1,360,470	+		IAI47_06535	0.50	+3.8
1,360,470	+		IAI47_06535	0.50	+1.1
1,360,471	-		IAI47_06535	0.50	-0.4
1,360,566	-		IAI47_06535	0.56	+0.1
1,360,640	+		IAI47_06535	0.60	-2.2
1,360,641	-		IAI47_06535	0.60	-0.5
1,360,641	-		IAI47_06535	0.60	+0.3
1,360,673	-		IAI47_06535	0.62	-0.6
1,360,763	+		IAI47_06535	0.68	+0.2
1,360,763	+		IAI47_06535	0.68	-1.0
1,360,763	+		IAI47_06535	0.68	+1.7
1,360,764	-		IAI47_06535	0.68	+1.7
1,360,798	+		IAI47_06535	0.70	+0.2
1,360,798	+		IAI47_06535	0.70	-0.6
1,360,798	+		IAI47_06535	0.70	+4.6
1,360,856	-		IAI47_06535	0.73	-0.0
1,360,976	-		IAI47_06535	0.80	+0.8
1,360,976	-		IAI47_06535	0.80	-1.2
1,361,011	+		IAI47_06535	0.83	-0.0
1,361,011	+		IAI47_06535	0.83	-0.8
1,361,012	-		IAI47_06535	0.83	-0.6
1,361,012	-		IAI47_06535	0.83	+0.9
1,361,061	+		IAI47_06535	0.86	+1.0
1,361,062	-		IAI47_06535	0.86	+2.0
1,361,112	-		IAI47_06535	0.89	+2.1
1,361,147	-				+1.5
1,361,147	-				+1.4
1,361,161	+				-1.0
1,361,162	-				-0.4
1,361,162	-				+1.1
1,361,180	+				+0.5
1,361,180	+				+1.6
1,361,180	+				+0.5
1,361,180	+				-0.9
1,361,180	+				+1.0
1,361,181	-				-0.6
1,361,181	-				-1.9
1,361,181	-				-1.2
1,361,181	-				-2.9
1,361,323	+				-1.2
1,361,323	+				-0.9
1,361,324	-				-0.4
1,361,362	+				+1.0
1,361,363	-				+1.5
1,361,363	-				+0.4
1,361,373	+				-1.0
1,361,373	+				+3.4
1,361,373	+				+1.4
1,361,374	-				-0.1
1,361,431	+				-2.5
1,361,438	+				-0.3
1,361,439	-				+1.2
1,361,439	-				+0.6
1,361,439	-				+0.1
1,361,439	-				-1.2
1,361,439	-				+0.4
1,361,449	+				-0.4
1,361,449	+				+0.4
1,361,449	+				-1.4
1,361,449	+				+0.0
1,361,449	+				-1.5
1,361,449	+				+0.8
1,361,460	+				-0.4
1,361,461	-				-0.8
1,361,531	-				+0.2
1,361,592	-				-0.0
1,361,597	+				+0.2
1,361,598	-				+0.9
1,361,648	+				-0.4
1,361,654	+				+0.0
1,361,654	+				+0.6
1,361,656	+				-0.8
1,361,656	+				+0.6
1,361,656	+				-0.1
1,361,656	+				+0.6
1,361,656	+				+1.1
1,361,656	+				+3.1
1,361,656	+				-0.1
1,361,656	+				+0.3
1,361,656	+				+1.2
1,361,656	+				+1.1
1,361,656	+				-1.7
1,361,656	+				-0.6
1,361,656	+				+0.6
1,361,656	+				+0.2
1,361,656	+				+0.6
1,361,656	+				+1.6
1,361,657	-				-0.0
1,361,657	-				+1.7
1,361,657	-				+1.4
1,361,657	-				+2.8
1,361,657	-				-0.4
1,361,657	-				-1.4
1,361,657	-				-1.0
1,361,657	-				-1.6
1,361,657	-				+0.4
1,361,657	-				+2.1
1,361,657	-				-2.6
1,361,657	-				-1.6
1,361,657	-				+0.5
1,361,660	+				-0.8
1,361,660	+				-1.4
1,361,660	+				+0.9
1,361,660	+				-3.2
1,361,660	+				-1.3
1,361,660	+				-1.5
1,361,660	+				-0.4
1,361,660	+				+2.1
1,361,660	+				-0.6
1,361,660	+				+1.4
1,361,660	+				-0.1
1,361,661	-				+0.6
1,361,661	-				+1.0
1,361,661	-				-1.8
1,361,661	-				-0.6
1,361,662	+				+0.4
1,361,662	+				-2.9
1,361,662	+				-0.3
1,361,662	+				+0.3
1,361,662	+				-2.7
1,361,662	+				+1.0
1,361,662	+				-1.7
1,361,662	+				-1.0
1,361,662	+				+2.5
1,361,662	+				-0.4
1,361,662	+				-0.1
1,361,662	+				+0.8
1,361,662	+				+0.6
1,361,662	+				-1.0
1,361,662	+				-0.8
1,361,662	+				+1.2
1,361,662	+				-2.4
1,361,662	+				+0.7
1,361,662	+				+0.3
1,361,663	-				+2.8
1,361,663	-				+0.6
1,361,663	-				-1.0
1,361,663	-				+0.9
1,361,663	-				-0.0
1,361,663	-				+1.8
1,361,663	-				-1.2
1,361,663	-				-1.4
1,361,663	-				-1.4
1,361,663	-				+1.2
1,361,663	-				+1.1
1,361,663	-				+0.8
1,361,663	-				+0.6
1,361,663	-				+0.4
1,361,669	+				-1.4
1,361,670	-				+0.4
1,361,670	-				-1.8
1,361,680	+				-0.1
1,361,680	+				+1.7
1,361,680	+				+1.6
1,361,680	+				+1.5
1,361,680	+				-0.7
1,361,680	+				+0.0
1,361,681	-				-0.0
1,361,681	-				-1.4
1,361,681	-				+0.1
1,361,681	-				+1.7
1,361,684	+				-2.1
1,361,684	+				-1.3
1,361,685	-				+3.0
1,361,685	-				+0.2
1,361,685	-				+2.2
1,361,685	-				-1.5
1,361,702	+		IAI47_06540	0.10	-0.2
1,361,702	+		IAI47_06540	0.10	-1.4
1,361,702	+		IAI47_06540	0.10	+1.2
1,361,702	+		IAI47_06540	0.10	-0.4
1,361,703	-		IAI47_06540	0.10	+1.3
1,361,703	-		IAI47_06540	0.10	+1.0
1,361,703	-		IAI47_06540	0.10	-0.8
1,361,703	-		IAI47_06540	0.10	-0.8
1,361,703	-		IAI47_06540	0.10	-2.4
1,361,811	-		IAI47_06540	0.17	+0.3
1,361,811	-		IAI47_06540	0.17	-0.1
1,361,811	-		IAI47_06540	0.17	-1.2
1,361,815	+		IAI47_06540	0.17	-0.2
1,361,815	+		IAI47_06540	0.17	-0.8
1,361,815	+		IAI47_06540	0.17	+0.0
1,361,816	-		IAI47_06540	0.17	-0.0
1,361,835	+		IAI47_06540	0.18	+0.6
1,361,835	+		IAI47_06540	0.18	-1.8
1,361,836	-		IAI47_06540	0.18	+0.4
1,361,836	-		IAI47_06540	0.18	-2.0
1,361,853	+		IAI47_06540	0.19	+0.8
1,361,854	-		IAI47_06540	0.20	+2.6
1,361,884	+		IAI47_06540	0.21	+0.4
1,361,884	+		IAI47_06540	0.21	+0.5
1,361,884	+		IAI47_06540	0.21	+0.5
1,361,884	+		IAI47_06540	0.21	+0.8
1,361,884	+		IAI47_06540	0.21	-0.8
1,361,884	+		IAI47_06540	0.21	-0.8
1,361,884	+		IAI47_06540	0.21	+0.6
1,361,885	-		IAI47_06540	0.21	-0.3
1,361,885	-		IAI47_06540	0.21	+0.3
1,361,885	-		IAI47_06540	0.21	+1.9
1,361,888	+		IAI47_06540	0.22	+0.0
1,361,888	+		IAI47_06540	0.22	+1.1
1,361,889	-		IAI47_06540	0.22	+0.6
1,361,889	-		IAI47_06540	0.22	-0.6
1,361,909	+		IAI47_06540	0.23	+1.5
1,361,910	-		IAI47_06540	0.23	-0.8
1,361,945	+		IAI47_06540	0.25	+1.3
1,361,946	-		IAI47_06540	0.25	-2.4
1,361,946	-		IAI47_06540	0.25	-0.5
1,361,946	-		IAI47_06540	0.25	-0.4
1,361,946	-		IAI47_06540	0.25	+1.1
1,361,993	-		IAI47_06540	0.28	+0.4
1,361,993	-		IAI47_06540	0.28	+1.1
1,362,005	+		IAI47_06540	0.29	-0.8
1,362,006	-		IAI47_06540	0.29	+1.4
1,362,007	+		IAI47_06540	0.29	+0.3
1,362,015	-		IAI47_06540	0.29	+3.7
1,362,016	+		IAI47_06540	0.29	+1.6
1,362,017	-		IAI47_06540	0.29	-1.0
1,362,017	-		IAI47_06540	0.29	+0.4
1,362,017	-		IAI47_06540	0.29	+1.7
1,362,038	+		IAI47_06540	0.31	+1.2
1,362,044	+		IAI47_06540	0.31	+1.5
1,362,045	-		IAI47_06540	0.31	-0.3
1,362,045	-		IAI47_06540	0.31	+0.6
1,362,053	+		IAI47_06540	0.31	+1.0
1,362,053	+		IAI47_06540	0.31	+1.6
1,362,053	+		IAI47_06540	0.31	-2.0
1,362,053	+		IAI47_06540	0.31	+0.0
1,362,053	+		IAI47_06540	0.31	+0.8
1,362,053	+		IAI47_06540	0.31	-1.1
1,362,053	+		IAI47_06540	0.31	-1.1
1,362,054	-		IAI47_06540	0.32	+1.1
1,362,055	+		IAI47_06540	0.32	-0.2
1,362,055	+		IAI47_06540	0.32	+0.2
1,362,055	+		IAI47_06540	0.32	+0.9
1,362,055	+		IAI47_06540	0.32	+2.6
1,362,055	+		IAI47_06540	0.32	-0.5
1,362,055	+		IAI47_06540	0.32	+0.4
1,362,055	+		IAI47_06540	0.32	-0.8
1,362,055	+		IAI47_06540	0.32	-0.9
1,362,055	+		IAI47_06540	0.32	+0.4
1,362,056	-		IAI47_06540	0.32	-2.9
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1,362,056	-		IAI47_06540	0.32	+2.6
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1,362,056	-		IAI47_06540	0.32	+0.3
1,362,057	+		IAI47_06540	0.32	+1.0
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1,362,057	+		IAI47_06540	0.32	-1.2
1,362,057	+		IAI47_06540	0.32	+1.0
1,362,057	+		IAI47_06540	0.32	+0.6
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1,362,058	-		IAI47_06540	0.32	+0.5
1,362,058	-		IAI47_06540	0.32	+0.8
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1,362,058	-		IAI47_06540	0.32	+0.7
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1,362,070	+		IAI47_06540	0.32	+2.0
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1,362,073	+		IAI47_06540	0.33	-0.3
1,362,074	-		IAI47_06540	0.33	-1.2
1,362,074	-		IAI47_06540	0.33	-1.0
1,362,074	-		IAI47_06540	0.33	+1.0
1,362,074	-		IAI47_06540	0.33	+0.2
1,362,074	-		IAI47_06540	0.33	+2.3
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1,362,088	+		IAI47_06540	0.34	+0.1
1,362,089	-		IAI47_06540	0.34	-1.2
1,362,089	-		IAI47_06540	0.34	+3.3
1,362,089	-		IAI47_06540	0.34	+1.7
1,362,092	+		IAI47_06540	0.34	-1.6
1,362,093	-		IAI47_06540	0.34	+0.2
1,362,265	+		IAI47_06540	0.44	+0.8