Strain Fitness in Pantoea sp. MT58 around IAI47_05800

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,201,428	-				+1.1
1,201,428	-				-1.4
1,201,442	-		IAI47_05790	0.13	+2.4
1,201,442	-		IAI47_05790	0.13	+1.7
1,201,507	-		IAI47_05790	0.45	+0.4
1,201,515	-		IAI47_05790	0.49	-2.7
1,201,515	-		IAI47_05790	0.49	-0.2
1,201,515	-		IAI47_05790	0.49	-1.3
1,201,515	-		IAI47_05790	0.49	+2.3
1,201,540	-		IAI47_05790	0.62	+0.5
1,201,566	-		IAI47_05790	0.75	+1.5
1,201,566	-		IAI47_05790	0.75	-0.2
1,201,613	-				+0.8
1,201,630	-				-0.3
1,201,630	-				-0.9
1,201,705	-				-1.2
1,201,705	-				-1.5
1,201,725	-				+0.0
1,201,725	-				+0.5
1,201,725	-				+0.8
1,201,725	-				+0.9
1,201,725	-				+0.2
1,201,725	-				+1.1
1,201,725	-				+2.8
1,201,746	-				-1.1
1,201,816	-		IAI47_05795	0.29	+0.0
1,201,920	-		IAI47_05795	0.63	-0.9
1,201,920	-		IAI47_05795	0.63	-0.2
1,201,920	-		IAI47_05795	0.63	-2.3
1,201,972	-		IAI47_05795	0.81	+1.9
1,201,972	-		IAI47_05795	0.81	+1.8
1,201,972	-		IAI47_05795	0.81	-0.3
1,201,981	-		IAI47_05795	0.84	+2.8
1,201,981	-		IAI47_05795	0.84	-1.0
1,201,981	-		IAI47_05795	0.84	+1.3
1,201,981	-		IAI47_05795	0.84	-2.3
1,202,031	-				-0.1
1,202,031	-				-0.5
1,202,031	-				-0.7
1,202,031	-				+2.1
1,202,035	-				-0.0
1,202,035	-				-2.1
1,202,035	-				+1.9
1,202,035	-				+1.5
1,202,035	-				+0.0
1,202,051	-				+0.1
1,202,064	+				-2.4
1,202,064	+				+0.8
1,202,065	-				+0.7
1,202,076	-				+0.3
1,202,078	+				-1.1
1,202,083	+				+1.5
1,202,083	+				-1.5
1,202,083	+				+0.1
1,202,083	+				-1.3
1,202,083	+				+2.1
1,202,084	-				-1.5
1,202,087	+				+0.1
1,202,087	+				-0.7
1,202,087	+				-0.9
1,202,087	+				+0.4
1,202,087	+				+1.5
1,202,087	+				+0.7
1,202,087	+				-1.0
1,202,088	-				+1.1
1,202,088	-				-1.4
1,202,088	-				+1.3
1,202,088	-				+0.0
1,202,088	-				+0.2
1,202,088	-				-1.8
1,202,113	+				-0.4
1,202,153	-				+3.8
1,202,153	-				+0.0
1,202,153	-				-1.6
1,202,153	-				-1.1
1,202,197	+		IAI47_05800	0.12	-0.9
1,202,198	-		IAI47_05800	0.13	-0.1
1,202,217	+		IAI47_05800	0.17	-2.7
1,202,217	+		IAI47_05800	0.17	+0.2
1,202,217	+		IAI47_05800	0.17	-2.3
1,202,217	+		IAI47_05800	0.17	+1.0
1,202,218	-		IAI47_05800	0.17	-0.8
1,202,218	-		IAI47_05800	0.17	+0.5
1,202,218	-		IAI47_05800	0.17	-1.3
1,202,218	-		IAI47_05800	0.17	-0.3
1,202,244	+		IAI47_05800	0.23	+2.8
1,202,245	-		IAI47_05800	0.23	+0.2
1,202,276	+		IAI47_05800	0.30	+0.3
1,202,276	+		IAI47_05800	0.30	+1.0
1,202,276	+		IAI47_05800	0.30	+0.1
1,202,276	+		IAI47_05800	0.30	-1.0
1,202,284	+		IAI47_05800	0.32	+0.6
1,202,285	-		IAI47_05800	0.32	+0.9
1,202,291	+		IAI47_05800	0.33	-0.2
1,202,292	-		IAI47_05800	0.34	-2.2
1,202,320	-		IAI47_05800	0.40	-0.5
1,202,320	-		IAI47_05800	0.40	+1.9
1,202,320	-		IAI47_05800	0.40	+0.6
1,202,395	+		IAI47_05800	0.56	+5.1
1,202,409	+		IAI47_05800	0.60	-0.7
1,202,494	+		IAI47_05800	0.78	-0.6
1,202,518	+		IAI47_05800	0.84	+0.2
1,202,518	+		IAI47_05800	0.84	+0.5
1,202,518	+		IAI47_05800	0.84	-0.3
1,202,518	+		IAI47_05800	0.84	+0.8
1,202,518	+		IAI47_05800	0.84	-0.4
1,202,519	-		IAI47_05800	0.84	+0.9
1,202,519	-		IAI47_05800	0.84	-1.7
1,202,523	+		IAI47_05800	0.85	-1.1
1,202,524	-		IAI47_05800	0.85	-0.4
1,202,524	-		IAI47_05800	0.85	+1.1
1,202,547	+				-1.3
1,202,548	-				-1.4
1,202,572	+				-2.0
1,202,590	+				-1.5
1,202,596	+				+0.7
1,202,596	+				+1.1
1,202,596	+				-2.2
1,202,596	+				-0.1
1,202,596	+				+3.5
1,202,596	+				-0.7
1,202,597	-				+1.9
1,202,597	-				-0.8
1,202,597	-				-1.3
1,202,597	-				-1.1
1,202,597	-				-0.2
1,202,714	-				+0.1
1,202,714	-				-1.2
1,202,714	-				+0.3
1,202,714	-				+0.0
1,202,752	+				-2.3
1,202,753	-				-2.3
1,202,773	+				+0.0
1,202,774	-				-2.1
1,202,774	-				-1.3
1,202,774	-				-1.4
1,202,839	+				-0.7
1,202,840	-				+1.0
1,202,840	-				-1.4
1,202,840	-				-0.4
1,202,840	-				-2.7
1,202,891	-				+0.9
1,203,030	+				-0.9
1,203,031	-				-2.5
1,203,031	-				-0.6
1,203,146	+		IAI47_05805	0.16	+1.1
1,203,176	+		IAI47_05805	0.21	+0.9
1,203,176	+		IAI47_05805	0.21	+0.1
1,203,176	+		IAI47_05805	0.21	-0.9
1,203,176	+		IAI47_05805	0.21	-1.3
1,203,276	+		IAI47_05805	0.35	-2.3
1,203,276	+		IAI47_05805	0.35	+0.6
1,203,276	+		IAI47_05805	0.35	-1.5
1,203,276	+		IAI47_05805	0.35	+1.4
1,203,276	+		IAI47_05805	0.35	+2.6
1,203,276	+		IAI47_05805	0.35	+0.0
1,203,277	-		IAI47_05805	0.35	-2.0
1,203,277	-		IAI47_05805	0.35	-0.4
1,203,277	-		IAI47_05805	0.35	-0.4
1,203,277	-		IAI47_05805	0.35	+0.7
1,203,277	-		IAI47_05805	0.35	-1.7
1,203,412	+		IAI47_05805	0.54	+1.3
1,203,451	+		IAI47_05805	0.60	+2.5
1,203,451	+		IAI47_05805	0.60	+0.4
1,203,451	+		IAI47_05805	0.60	-0.8
1,203,451	+		IAI47_05805	0.60	+2.1
1,203,451	+		IAI47_05805	0.60	+1.1
1,203,451	+		IAI47_05805	0.60	-0.4
1,203,451	+		IAI47_05805	0.60	+0.1
1,203,451	+		IAI47_05805	0.60	+1.8
1,203,451	+		IAI47_05805	0.60	-0.1
1,203,451	+		IAI47_05805	0.60	+0.2
1,203,451	+		IAI47_05805	0.60	-3.1
1,203,451	+		IAI47_05805	0.60	+2.6
1,203,452	-		IAI47_05805	0.60	+1.1
1,203,452	-		IAI47_05805	0.60	+1.9
1,203,452	-		IAI47_05805	0.60	-1.1
1,203,452	-		IAI47_05805	0.60	+0.2
1,203,452	-		IAI47_05805	0.60	+1.5
1,203,452	-		IAI47_05805	0.60	+1.7
1,203,452	-		IAI47_05805	0.60	-0.7
1,203,452	-		IAI47_05805	0.60	-0.2
1,203,452	-		IAI47_05805	0.60	+4.6