Strain Fitness in Pantoea sp. MT58 around IAI47_05785

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,199,626	-		IAI47_05775	0.40	-0.2
1,199,626	-		IAI47_05775	0.40	+0.3
1,199,626	-		IAI47_05775	0.40	+0.3
1,199,626	-		IAI47_05775	0.40	+1.2
1,199,626	-		IAI47_05775	0.40	+2.1
1,199,668	+		IAI47_05775	0.47	+0.5
1,199,669	-		IAI47_05775	0.47	+0.4
1,199,669	-		IAI47_05775	0.47	-1.4
1,199,685	-		IAI47_05775	0.50	-1.1
1,199,706	-		IAI47_05775	0.53	-0.6
1,199,725	-		IAI47_05775	0.57	-1.6
1,199,725	-		IAI47_05775	0.57	+0.7
1,199,725	-		IAI47_05775	0.57	-1.7
1,199,773	-		IAI47_05775	0.65	-0.4
1,199,773	-		IAI47_05775	0.65	-0.4
1,199,777	+		IAI47_05775	0.65	-0.7
1,199,778	-		IAI47_05775	0.65	-0.8
1,199,778	-		IAI47_05775	0.65	-0.2
1,199,778	-		IAI47_05775	0.65	+1.1
1,199,778	-		IAI47_05775	0.65	+1.8
1,199,778	-		IAI47_05775	0.65	+3.3
1,199,778	-		IAI47_05775	0.65	-1.7
1,199,778	-		IAI47_05775	0.65	+0.8
1,199,793	-		IAI47_05775	0.68	-2.0
1,199,994	-				-0.5
1,199,994	-				+1.2
1,199,994	-				+0.8
1,199,994	-				-1.4
1,199,994	-				-0.1
1,199,994	-				+1.3
1,199,998	-				-1.1
1,199,998	-				-1.8
1,199,998	-				-0.9
1,200,005	-				+1.4
1,200,009	-				+0.3
1,200,029	-				+0.1
1,200,029	-				+2.6
1,200,029	-				+0.1
1,200,033	-				-2.0
1,200,033	-				-0.7
1,200,033	-				+1.2
1,200,033	-				+0.8
1,200,033	-				-0.9
1,200,033	-				+1.3
1,200,033	-				-1.1
1,200,033	-				+0.8
1,200,033	-				+0.3
1,200,033	-				+0.7
1,200,062	-		IAI47_05780	0.16	-0.2
1,200,062	-		IAI47_05780	0.16	-1.8
1,200,066	+		IAI47_05780	0.17	+1.9
1,200,067	-		IAI47_05780	0.17	-0.4
1,200,067	-		IAI47_05780	0.17	+1.0
1,200,067	-		IAI47_05780	0.17	-1.1
1,200,067	-		IAI47_05780	0.17	-1.4
1,200,067	-		IAI47_05780	0.17	+0.2
1,200,067	-		IAI47_05780	0.17	-0.5
1,200,119	-		IAI47_05780	0.30	+0.3
1,200,119	-		IAI47_05780	0.30	-0.9
1,200,119	-		IAI47_05780	0.30	-0.9
1,200,119	-		IAI47_05780	0.30	-1.7
1,200,119	-		IAI47_05780	0.30	-1.9
1,200,123	-		IAI47_05780	0.31	-0.3
1,200,123	-		IAI47_05780	0.31	-0.0
1,200,123	-		IAI47_05780	0.31	+0.1
1,200,123	-		IAI47_05780	0.31	-1.7
1,200,126	+		IAI47_05780	0.32	-1.8
1,200,127	-		IAI47_05780	0.32	-1.3
1,200,127	-		IAI47_05780	0.32	+0.2
1,200,127	-		IAI47_05780	0.32	-0.5
1,200,127	-		IAI47_05780	0.32	+1.7
1,200,153	-		IAI47_05780	0.39	+1.4
1,200,185	-		IAI47_05780	0.47	-1.8
1,200,185	-		IAI47_05780	0.47	-0.6
1,200,199	+		IAI47_05780	0.50	-0.4
1,200,200	-		IAI47_05780	0.50	+0.3
1,200,221	-		IAI47_05780	0.56	-1.0
1,200,265	+		IAI47_05780	0.67	+1.5
1,200,266	-		IAI47_05780	0.67	-2.0
1,200,266	-		IAI47_05780	0.67	+2.8
1,200,266	-		IAI47_05780	0.67	-0.4
1,200,266	-		IAI47_05780	0.67	-2.5
1,200,274	+		IAI47_05780	0.69	+1.6
1,200,274	+		IAI47_05780	0.69	+4.5
1,200,275	-		IAI47_05780	0.69	-2.5
1,200,275	-		IAI47_05780	0.69	+1.9
1,200,275	-		IAI47_05780	0.69	-1.4
1,200,293	-		IAI47_05780	0.74	+0.9
1,200,299	-		IAI47_05780	0.75	+1.9
1,200,299	-		IAI47_05780	0.75	-1.3
1,200,299	-		IAI47_05780	0.75	+0.4
1,200,308	-		IAI47_05780	0.77	+2.3
1,200,381	+				-2.1
1,200,390	-				-2.4
1,200,390	-				+1.9
1,200,398	-				-2.6
1,200,398	-				+0.2
1,200,404	+				+0.8
1,200,405	-				-0.9
1,200,415	+				-1.1
1,200,416	-				+2.3
1,200,416	-				+2.2
1,200,431	+				-1.3
1,200,431	+				+1.1
1,200,432	-				-2.4
1,200,444	-				-0.9
1,200,471	+				-0.0
1,200,471	+				+2.2
1,200,472	-				+1.5
1,200,472	-				+0.8
1,200,488	-				-1.0
1,200,497	-				-2.1
1,200,497	-				-1.7
1,200,534	-				+1.0
1,200,544	+				-0.7
1,200,557	+				-2.5
1,200,572	+				+0.8
1,200,572	+				+1.5
1,200,572	+				+1.3
1,200,572	+				-0.8
1,200,572	+				-0.2
1,200,572	+				-1.2
1,200,572	+				-1.9
1,200,573	-				-0.5
1,200,573	-				+2.8
1,200,573	-				-1.5
1,200,575	+				-2.5
1,200,575	+				-1.3
1,200,575	+				-0.1
1,200,576	-				+0.0
1,200,576	-				-0.5
1,200,576	-				-1.4
1,200,576	-				+1.0
1,200,600	+				+0.3
1,201,428	-				+1.1
1,201,428	-				-1.4
1,201,442	-		IAI47_05790	0.13	+2.4
1,201,442	-		IAI47_05790	0.13	+1.7
1,201,507	-		IAI47_05790	0.45	+0.4
1,201,515	-		IAI47_05790	0.49	-2.7
1,201,515	-		IAI47_05790	0.49	-0.2
1,201,515	-		IAI47_05790	0.49	-1.3
1,201,515	-		IAI47_05790	0.49	+2.3
1,201,540	-		IAI47_05790	0.62	+0.5
1,201,566	-		IAI47_05790	0.75	+1.5
1,201,566	-		IAI47_05790	0.75	-0.2
1,201,613	-				+0.8
1,201,630	-				-0.3
1,201,630	-				-0.9
1,201,705	-				-1.2
1,201,705	-				-1.5
1,201,725	-				+0.0
1,201,725	-				+0.5
1,201,725	-				+0.8
1,201,725	-				+0.9
1,201,725	-				+0.2
1,201,725	-				+1.1
1,201,725	-				+2.8
1,201,746	-				-1.1
1,201,816	-		IAI47_05795	0.29	+0.0
1,201,920	-		IAI47_05795	0.63	-0.9
1,201,920	-		IAI47_05795	0.63	-0.2
1,201,920	-		IAI47_05795	0.63	-2.3
1,201,972	-		IAI47_05795	0.81	+1.9
1,201,972	-		IAI47_05795	0.81	+1.8
1,201,972	-		IAI47_05795	0.81	-0.3
1,201,981	-		IAI47_05795	0.84	+2.8
1,201,981	-		IAI47_05795	0.84	-1.0
1,201,981	-		IAI47_05795	0.84	+1.3
1,201,981	-		IAI47_05795	0.84	-2.3
1,202,031	-				-0.1
1,202,031	-				-0.5
1,202,031	-				-0.7
1,202,031	-				+2.1
1,202,035	-				-0.0
1,202,035	-				-2.1
1,202,035	-				+1.9
1,202,035	-				+1.5
1,202,035	-				+0.0
1,202,051	-				+0.1
1,202,064	+				-2.4
1,202,064	+				+0.8
1,202,065	-				+0.7
1,202,076	-				+0.3
1,202,078	+				-1.1
1,202,083	+				+1.5
1,202,083	+				-1.5
1,202,083	+				+0.1
1,202,083	+				-1.3
1,202,083	+				+2.1
1,202,084	-				-1.5
1,202,087	+				+0.1
1,202,087	+				-0.7
1,202,087	+				-0.9
1,202,087	+				+0.4
1,202,087	+				+1.5
1,202,087	+				+0.7
1,202,087	+				-1.0
1,202,088	-				+1.1
1,202,088	-				-1.4
1,202,088	-				+1.3
1,202,088	-				+0.0
1,202,088	-				+0.2
1,202,088	-				-1.8
1,202,113	+				-0.4
1,202,153	-				+3.8
1,202,153	-				+0.0
1,202,153	-				-1.6
1,202,153	-				-1.1
1,202,197	+		IAI47_05800	0.12	-0.9
1,202,198	-		IAI47_05800	0.13	-0.1
1,202,217	+		IAI47_05800	0.17	-2.7
1,202,217	+		IAI47_05800	0.17	+0.2
1,202,217	+		IAI47_05800	0.17	-2.3
1,202,217	+		IAI47_05800	0.17	+1.0
1,202,218	-		IAI47_05800	0.17	-0.8
1,202,218	-		IAI47_05800	0.17	+0.5
1,202,218	-		IAI47_05800	0.17	-1.3
1,202,218	-		IAI47_05800	0.17	-0.3
1,202,244	+		IAI47_05800	0.23	+2.8
1,202,245	-		IAI47_05800	0.23	+0.2
1,202,276	+		IAI47_05800	0.30	+0.3
1,202,276	+		IAI47_05800	0.30	+1.0
1,202,276	+		IAI47_05800	0.30	+0.1
1,202,276	+		IAI47_05800	0.30	-1.0
1,202,284	+		IAI47_05800	0.32	+0.6
1,202,285	-		IAI47_05800	0.32	+0.9
1,202,291	+		IAI47_05800	0.33	-0.2
1,202,292	-		IAI47_05800	0.34	-2.2