Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29575

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29570 and AO356_29575 are separated by 282 nucleotidesAO356_29575 and AO356_29580 are separated by 195 nucleotides AO356_29570: AO356_29570 - LysR family transcriptional regulator, at 6,878,194 to 6,879,090 _29570 AO356_29575: AO356_29575 - diguanylate phosphodiesterase, at 6,879,373 to 6,880,155 _29575 AO356_29580: AO356_29580 - hypothetical protein, at 6,880,351 to 6,882,033 _29580 Position (kb) 6879 6880 6881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6878.392 kb on + strand, within AO356_29570at 6878.553 kb on + strand, within AO356_29570at 6878.566 kb on + strand, within AO356_29570at 6878.566 kb on + strand, within AO356_29570at 6878.566 kb on + strand, within AO356_29570at 6878.616 kb on - strand, within AO356_29570at 6878.671 kb on + strand, within AO356_29570at 6878.698 kb on + strand, within AO356_29570at 6878.702 kb on + strand, within AO356_29570at 6878.702 kb on + strand, within AO356_29570at 6878.702 kb on + strand, within AO356_29570at 6878.702 kb on + strand, within AO356_29570at 6878.702 kb on + strand, within AO356_29570at 6878.888 kb on - strand, within AO356_29570at 6878.888 kb on - strand, within AO356_29570at 6878.908 kb on + strand, within AO356_29570at 6878.909 kb on - strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.975 kb on + strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.976 kb on - strand, within AO356_29570at 6878.977 kb on + strand, within AO356_29570at 6878.977 kb on + strand, within AO356_29570at 6878.977 kb on + strand, within AO356_29570at 6878.977 kb on + strand, within AO356_29570at 6878.978 kb on - strand, within AO356_29570at 6878.978 kb on - strand, within AO356_29570at 6879.017 kb on + strandat 6879.084 kb on + strandat 6879.145 kb on + strandat 6879.149 kb on - strandat 6879.282 kb on + strandat 6879.282 kb on + strandat 6879.301 kb on + strandat 6879.342 kb on + strandat 6879.343 kb on - strandat 6879.374 kb on + strandat 6879.431 kb on + strandat 6879.431 kb on + strandat 6879.431 kb on + strandat 6879.432 kb on - strandat 6879.432 kb on - strandat 6879.432 kb on - strandat 6879.437 kb on + strandat 6879.438 kb on - strandat 6879.438 kb on - strandat 6879.438 kb on - strandat 6879.438 kb on - strandat 6879.438 kb on - strandat 6879.466 kb on + strand, within AO356_29575at 6879.845 kb on - strand, within AO356_29575at 6879.986 kb on + strand, within AO356_29575at 6880.028 kb on + strand, within AO356_29575at 6880.162 kb on + strandat 6880.162 kb on + strandat 6880.181 kb on + strandat 6880.181 kb on + strandat 6880.182 kb on - strandat 6880.196 kb on - strandat 6880.258 kb on + strandat 6880.258 kb on + strandat 6880.258 kb on + strandat 6880.259 kb on - strandat 6880.259 kb on - strandat 6880.259 kb on - strandat 6880.259 kb on - strandat 6880.293 kb on + strandat 6880.293 kb on + strandat 6880.299 kb on + strandat 6880.299 kb on + strandat 6880.314 kb on - strandat 6880.389 kb on + strandat 6880.389 kb on + strandat 6880.425 kb on - strandat 6880.509 kb on - strandat 6880.585 kb on + strand, within AO356_29580at 6880.585 kb on + strand, within AO356_29580at 6880.588 kb on + strand, within AO356_29580at 6880.589 kb on - strand, within AO356_29580at 6880.589 kb on - strand, within AO356_29580at 6880.639 kb on + strand, within AO356_29580at 6880.782 kb on + strand, within AO356_29580at 6880.876 kb on - strand, within AO356_29580at 6880.927 kb on - strand, within AO356_29580at 6880.951 kb on + strand, within AO356_29580at 6880.951 kb on + strand, within AO356_29580at 6880.951 kb on + strand, within AO356_29580at 6880.951 kb on + strand, within AO356_29580at 6880.951 kb on + strand, within AO356_29580at 6880.974 kb on - strand, within AO356_29580at 6881.067 kb on - strand, within AO356_29580at 6881.096 kb on + strand, within AO356_29580at 6881.096 kb on + strand, within AO356_29580at 6881.097 kb on - strand, within AO356_29580at 6881.144 kb on - strand, within AO356_29580at 6881.144 kb on - strand, within AO356_29580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,878,392 + AO356_29570 0.22 +1.0
6,878,553 + AO356_29570 0.40 -0.3
6,878,566 + AO356_29570 0.41 +0.3
6,878,566 + AO356_29570 0.41 -0.1
6,878,566 + AO356_29570 0.41 +0.2
6,878,616 - AO356_29570 0.47 -0.2
6,878,671 + AO356_29570 0.53 -1.0
6,878,698 + AO356_29570 0.56 +1.0
6,878,702 + AO356_29570 0.57 +0.4
6,878,702 + AO356_29570 0.57 +1.2
6,878,702 + AO356_29570 0.57 +0.3
6,878,702 + AO356_29570 0.57 -0.5
6,878,702 + AO356_29570 0.57 +1.2
6,878,888 - AO356_29570 0.77 +0.2
6,878,888 - AO356_29570 0.77 -0.0
6,878,908 + AO356_29570 0.80 +0.2
6,878,909 - AO356_29570 0.80 -0.1
6,878,975 + AO356_29570 0.87 +0.1
6,878,975 + AO356_29570 0.87 +0.3
6,878,975 + AO356_29570 0.87 +0.2
6,878,975 + AO356_29570 0.87 +0.9
6,878,975 + AO356_29570 0.87 -1.4
6,878,975 + AO356_29570 0.87 -0.0
6,878,975 + AO356_29570 0.87 +0.9
6,878,976 - AO356_29570 0.87 -1.9
6,878,976 - AO356_29570 0.87 +1.3
6,878,976 - AO356_29570 0.87 +1.1
6,878,976 - AO356_29570 0.87 +0.3
6,878,976 - AO356_29570 0.87 -0.0
6,878,976 - AO356_29570 0.87 -0.9
6,878,977 + AO356_29570 0.87 +0.0
6,878,977 + AO356_29570 0.87 +0.4
6,878,977 + AO356_29570 0.87 -0.6
6,878,977 + AO356_29570 0.87 -0.2
6,878,978 - AO356_29570 0.87 -1.3
6,878,978 - AO356_29570 0.87 +1.5
6,879,017 + +0.3
6,879,084 + -0.1
6,879,145 + +0.3
6,879,149 - -0.0
6,879,282 + +0.8
6,879,282 + -0.1
6,879,301 + +1.3
6,879,342 + -0.5
6,879,343 - -3.0
6,879,374 + +0.1
6,879,431 + -0.4
6,879,431 + -0.0
6,879,431 + -0.0
6,879,432 - +0.7
6,879,432 - -0.2
6,879,432 - -1.2
6,879,437 + -0.2
6,879,438 - +0.5
6,879,438 - +0.1
6,879,438 - +0.4
6,879,438 - +0.4
6,879,438 - +0.8
6,879,466 + AO356_29575 0.12 -0.2
6,879,845 - AO356_29575 0.60 -0.3
6,879,986 + AO356_29575 0.78 -0.7
6,880,028 + AO356_29575 0.84 -1.7
6,880,162 + +0.7
6,880,162 + -0.4
6,880,181 + -0.0
6,880,181 + -0.6
6,880,182 - +0.0
6,880,196 - -1.2
6,880,258 + -0.6
6,880,258 + +0.4
6,880,258 + +0.7
6,880,259 - +0.7
6,880,259 - -0.3
6,880,259 - +0.5
6,880,259 - +0.2
6,880,293 + -0.8
6,880,293 + -0.6
6,880,299 + -1.0
6,880,299 + +0.2
6,880,314 - +1.1
6,880,389 + +0.6
6,880,389 + -1.8
6,880,425 - -0.2
6,880,509 - +0.7
6,880,585 + AO356_29580 0.14 -0.1
6,880,585 + AO356_29580 0.14 +0.2
6,880,588 + AO356_29580 0.14 -0.5
6,880,589 - AO356_29580 0.14 +0.2
6,880,589 - AO356_29580 0.14 -0.7
6,880,639 + AO356_29580 0.17 +0.6
6,880,782 + AO356_29580 0.26 +0.5
6,880,876 - AO356_29580 0.31 +0.4
6,880,927 - AO356_29580 0.34 +0.2
6,880,951 + AO356_29580 0.36 +0.2
6,880,951 + AO356_29580 0.36 +1.0
6,880,951 + AO356_29580 0.36 +1.0
6,880,951 + AO356_29580 0.36 -0.8
6,880,951 + AO356_29580 0.36 +0.1
6,880,974 - AO356_29580 0.37 +2.0
6,881,067 - AO356_29580 0.43 -0.2
6,881,096 + AO356_29580 0.44 +1.0
6,881,096 + AO356_29580 0.44 +0.9
6,881,097 - AO356_29580 0.44 -0.7
6,881,144 - AO356_29580 0.47 +0.2
6,881,144 - AO356_29580 0.47 -0.1

Or see this region's nucleotide sequence