Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27925

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27920 and AO356_27925 are separated by 213 nucleotidesAO356_27925 and AO356_27930 are separated by 109 nucleotides AO356_27920: AO356_27920 - p-hydroxycinnamoyl CoA hydratase/lyase, at 6,371,242 to 6,372,072 _27920 AO356_27925: AO356_27925 - MarR family transcriptional regulator, at 6,372,286 to 6,372,771 _27925 AO356_27930: AO356_27930 - porin, at 6,372,881 to 6,374,188 _27930 Position (kb) 6372 6373Strain fitness (log2 ratio) -2 -1 0 1at 6371.357 kb on + strand, within AO356_27920at 6371.357 kb on + strand, within AO356_27920at 6371.363 kb on + strand, within AO356_27920at 6371.364 kb on - strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.567 kb on + strand, within AO356_27920at 6371.567 kb on + strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.849 kb on + strand, within AO356_27920at 6371.850 kb on - strand, within AO356_27920at 6372.062 kb on + strandat 6372.063 kb on - strandat 6372.202 kb on - strandat 6372.265 kb on - strandat 6372.265 kb on - strandat 6372.568 kb on - strand, within AO356_27925at 6372.626 kb on - strand, within AO356_27925at 6372.769 kb on + strandat 6372.830 kb on + strandat 6372.831 kb on - strandat 6372.831 kb on - strandat 6372.900 kb on + strandat 6372.900 kb on + strandat 6372.900 kb on + strandat 6372.901 kb on - strandat 6372.901 kb on - strandat 6372.966 kb on + strandat 6372.966 kb on + strandat 6373.023 kb on + strand, within AO356_27930at 6373.104 kb on + strand, within AO356_27930at 6373.104 kb on + strand, within AO356_27930at 6373.104 kb on + strand, within AO356_27930at 6373.104 kb on + strand, within AO356_27930at 6373.105 kb on - strand, within AO356_27930at 6373.153 kb on - strand, within AO356_27930at 6373.249 kb on - strand, within AO356_27930at 6373.249 kb on - strand, within AO356_27930at 6373.249 kb on - strand, within AO356_27930at 6373.433 kb on - strand, within AO356_27930at 6373.485 kb on + strand, within AO356_27930at 6373.533 kb on + strand, within AO356_27930at 6373.533 kb on + strand, within AO356_27930at 6373.533 kb on + strand, within AO356_27930at 6373.534 kb on - strand, within AO356_27930at 6373.534 kb on - strand, within AO356_27930at 6373.534 kb on - strand, within AO356_27930at 6373.636 kb on + strand, within AO356_27930at 6373.636 kb on + strand, within AO356_27930at 6373.636 kb on + strand, within AO356_27930at 6373.751 kb on + strand, within AO356_27930at 6373.751 kb on + strand, within AO356_27930at 6373.752 kb on - strand, within AO356_27930at 6373.752 kb on - strand, within AO356_27930

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,371,357 + AO356_27920 0.14 -0.3
6,371,357 + AO356_27920 0.14 +0.3
6,371,363 + AO356_27920 0.15 +0.3
6,371,364 - AO356_27920 0.15 +0.2
6,371,564 + AO356_27920 0.39 +0.8
6,371,564 + AO356_27920 0.39 +0.3
6,371,564 + AO356_27920 0.39 +0.1
6,371,564 + AO356_27920 0.39 +0.4
6,371,564 + AO356_27920 0.39 +0.3
6,371,565 - AO356_27920 0.39 -0.3
6,371,565 - AO356_27920 0.39 -0.2
6,371,565 - AO356_27920 0.39 -0.3
6,371,567 + AO356_27920 0.39 -0.2
6,371,567 + AO356_27920 0.39 -0.2
6,371,760 - AO356_27920 0.62 -0.5
6,371,760 - AO356_27920 0.62 -0.0
6,371,760 - AO356_27920 0.62 +0.1
6,371,849 + AO356_27920 0.73 +0.3
6,371,850 - AO356_27920 0.73 -0.7
6,372,062 + +0.0
6,372,063 - +0.4
6,372,202 - -0.5
6,372,265 - -0.6
6,372,265 - -0.8
6,372,568 - AO356_27925 0.58 -0.7
6,372,626 - AO356_27925 0.70 -0.8
6,372,769 + +0.7
6,372,830 + +0.5
6,372,831 - +0.6
6,372,831 - -2.1
6,372,900 + -0.1
6,372,900 + +0.9
6,372,900 + +0.7
6,372,901 - -0.3
6,372,901 - -1.3
6,372,966 + +1.1
6,372,966 + -1.1
6,373,023 + AO356_27930 0.11 +0.9
6,373,104 + AO356_27930 0.17 +0.9
6,373,104 + AO356_27930 0.17 +1.4
6,373,104 + AO356_27930 0.17 +1.4
6,373,104 + AO356_27930 0.17 +0.0
6,373,105 - AO356_27930 0.17 -0.2
6,373,153 - AO356_27930 0.21 -0.4
6,373,249 - AO356_27930 0.28 +0.1
6,373,249 - AO356_27930 0.28 -0.4
6,373,249 - AO356_27930 0.28 -0.3
6,373,433 - AO356_27930 0.42 +0.2
6,373,485 + AO356_27930 0.46 -0.3
6,373,533 + AO356_27930 0.50 -0.1
6,373,533 + AO356_27930 0.50 +0.8
6,373,533 + AO356_27930 0.50 -0.2
6,373,534 - AO356_27930 0.50 +0.6
6,373,534 - AO356_27930 0.50 -0.3
6,373,534 - AO356_27930 0.50 -0.1
6,373,636 + AO356_27930 0.58 -0.3
6,373,636 + AO356_27930 0.58 -1.0
6,373,636 + AO356_27930 0.58 +0.0
6,373,751 + AO356_27930 0.67 -0.1
6,373,751 + AO356_27930 0.67 +0.1
6,373,752 - AO356_27930 0.67 +0.2
6,373,752 - AO356_27930 0.67 -0.1

Or see this region's nucleotide sequence