Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27565 and AO356_27570 are separated by 135 nucleotides AO356_27570 and AO356_27575 are separated by 56 nucleotides
AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378
_27565
AO356_27570: AO356_27570 - short-chain dehydrogenase, at 6,290,514 to 6,291,299
_27570
AO356_27575: AO356_27575 - Long-chain fatty acid transport protein, at 6,291,356 to 6,292,627
_27575
Position (kb)
6290
6291
6292 Strain fitness (log2 ratio)
-1
0
1
2 at 6289.566 kb on + strand, within AO356_27565 at 6289.872 kb on + strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6290.514 kb on - strand at 6290.589 kb on + strand at 6290.590 kb on - strand at 6290.760 kb on - strand, within AO356_27570 at 6290.760 kb on - strand, within AO356_27570 at 6290.859 kb on - strand, within AO356_27570 at 6290.952 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6291.358 kb on - strand at 6291.379 kb on + strand at 6291.417 kb on + strand at 6291.418 kb on - strand at 6291.471 kb on + strand at 6291.471 kb on + strand at 6291.472 kb on - strand at 6291.472 kb on - strand at 6291.472 kb on - strand at 6291.638 kb on - strand, within AO356_27575 at 6291.639 kb on + strand, within AO356_27575 at 6291.640 kb on - strand, within AO356_27575 at 6291.789 kb on + strand, within AO356_27575 at 6291.790 kb on - strand, within AO356_27575 at 6291.848 kb on - strand, within AO356_27575 at 6291.870 kb on + strand, within AO356_27575 at 6291.940 kb on - strand, within AO356_27575 at 6291.957 kb on + strand, within AO356_27575 at 6291.957 kb on + strand, within AO356_27575 at 6291.958 kb on - strand, within AO356_27575 at 6292.057 kb on + strand, within AO356_27575 at 6292.108 kb on + strand, within AO356_27575 at 6292.109 kb on - strand, within AO356_27575 at 6292.109 kb on - strand, within AO356_27575 at 6292.158 kb on + strand, within AO356_27575 at 6292.213 kb on - strand, within AO356_27575 at 6292.263 kb on + strand, within AO356_27575 at 6292.264 kb on - strand, within AO356_27575
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,289,566 + AO356_27565 0.44 +0.2 6,289,872 + AO356_27565 0.65 +0.1 6,289,873 - AO356_27565 0.65 +0.9 6,289,873 - AO356_27565 0.65 +0.5 6,290,514 - -0.6 6,290,589 + +0.2 6,290,590 - -0.8 6,290,760 - AO356_27570 0.31 -0.0 6,290,760 - AO356_27570 0.31 +0.9 6,290,859 - AO356_27570 0.44 +0.3 6,290,952 + AO356_27570 0.56 +1.1 6,290,997 + AO356_27570 0.61 +0.9 6,290,997 + AO356_27570 0.61 -0.4 6,290,998 - AO356_27570 0.62 +0.6 6,290,998 - AO356_27570 0.62 -0.2 6,290,998 - AO356_27570 0.62 -0.0 6,290,998 - AO356_27570 0.62 +0.8 6,290,998 - AO356_27570 0.62 -0.1 6,291,358 - +0.4 6,291,379 + +0.5 6,291,417 + -0.3 6,291,418 - +1.5 6,291,471 + +0.7 6,291,471 + +0.7 6,291,472 - +0.0 6,291,472 - +2.0 6,291,472 - +0.3 6,291,638 - AO356_27575 0.22 +0.6 6,291,639 + AO356_27575 0.22 -0.4 6,291,640 - AO356_27575 0.22 -0.2 6,291,789 + AO356_27575 0.34 +0.1 6,291,790 - AO356_27575 0.34 -0.0 6,291,848 - AO356_27575 0.39 -1.0 6,291,870 + AO356_27575 0.40 +0.8 6,291,940 - AO356_27575 0.46 +0.1 6,291,957 + AO356_27575 0.47 -0.6 6,291,957 + AO356_27575 0.47 +0.9 6,291,958 - AO356_27575 0.47 -0.4 6,292,057 + AO356_27575 0.55 +0.6 6,292,108 + AO356_27575 0.59 -0.5 6,292,109 - AO356_27575 0.59 -0.4 6,292,109 - AO356_27575 0.59 +0.9 6,292,158 + AO356_27575 0.63 +0.1 6,292,213 - AO356_27575 0.67 +0.2 6,292,263 + AO356_27575 0.71 +0.0 6,292,264 - AO356_27575 0.71 +0.1
Or see this region's nucleotide sequence