Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26860

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26855 and AO356_26860 are separated by 21 nucleotidesAO356_26860 and AO356_26865 are separated by 19 nucleotides AO356_26855: AO356_26855 - hypothetical protein, at 6,115,240 to 6,116,325 _26855 AO356_26860: AO356_26860 - hypothetical protein, at 6,116,347 to 6,117,225 _26860 AO356_26865: AO356_26865 - hypothetical protein, at 6,117,245 to 6,118,504 _26865 Position (kb) 6116 6117 6118Strain fitness (log2 ratio) -2 -1 0 1 2at 6115.384 kb on - strand, within AO356_26855at 6115.500 kb on + strand, within AO356_26855at 6115.547 kb on - strand, within AO356_26855at 6115.547 kb on - strand, within AO356_26855at 6115.547 kb on - strand, within AO356_26855at 6115.644 kb on + strand, within AO356_26855at 6115.644 kb on + strand, within AO356_26855at 6115.661 kb on - strand, within AO356_26855at 6115.662 kb on + strand, within AO356_26855at 6115.663 kb on - strand, within AO356_26855at 6115.663 kb on - strand, within AO356_26855at 6115.845 kb on - strand, within AO356_26855at 6115.845 kb on - strand, within AO356_26855at 6115.945 kb on + strand, within AO356_26855at 6115.946 kb on - strand, within AO356_26855at 6116.093 kb on - strand, within AO356_26855at 6116.104 kb on + strand, within AO356_26855at 6116.104 kb on + strand, within AO356_26855at 6116.104 kb on + strand, within AO356_26855at 6116.193 kb on - strand, within AO356_26855at 6116.200 kb on + strand, within AO356_26855at 6116.211 kb on + strand, within AO356_26855at 6116.212 kb on - strand, within AO356_26855at 6116.212 kb on - strand, within AO356_26855at 6116.311 kb on - strandat 6116.311 kb on - strandat 6116.311 kb on - strandat 6116.324 kb on - strandat 6116.407 kb on + strandat 6116.407 kb on + strandat 6116.408 kb on - strandat 6116.408 kb on - strandat 6116.419 kb on + strandat 6116.476 kb on + strand, within AO356_26860at 6116.476 kb on + strand, within AO356_26860at 6116.476 kb on + strand, within AO356_26860at 6116.476 kb on + strand, within AO356_26860at 6116.476 kb on + strand, within AO356_26860at 6116.476 kb on + strand, within AO356_26860at 6116.477 kb on - strand, within AO356_26860at 6116.477 kb on - strand, within AO356_26860at 6116.477 kb on - strand, within AO356_26860at 6116.479 kb on + strand, within AO356_26860at 6116.479 kb on + strand, within AO356_26860at 6116.590 kb on + strand, within AO356_26860at 6116.599 kb on - strand, within AO356_26860at 6116.692 kb on + strand, within AO356_26860at 6116.790 kb on + strand, within AO356_26860at 6116.791 kb on - strand, within AO356_26860at 6116.806 kb on + strand, within AO356_26860at 6116.807 kb on - strand, within AO356_26860at 6116.923 kb on + strand, within AO356_26860at 6116.923 kb on + strand, within AO356_26860at 6116.924 kb on - strand, within AO356_26860at 6116.924 kb on - strand, within AO356_26860at 6117.003 kb on + strand, within AO356_26860at 6117.004 kb on - strand, within AO356_26860at 6117.064 kb on + strand, within AO356_26860at 6117.065 kb on - strand, within AO356_26860at 6117.066 kb on + strand, within AO356_26860at 6117.067 kb on - strand, within AO356_26860at 6117.071 kb on + strand, within AO356_26860at 6117.072 kb on - strand, within AO356_26860at 6117.072 kb on - strand, within AO356_26860at 6117.156 kb on - strandat 6117.156 kb on - strandat 6117.156 kb on - strandat 6117.242 kb on + strandat 6117.242 kb on + strandat 6117.243 kb on - strandat 6117.243 kb on - strandat 6117.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,115,384 - AO356_26855 0.13 +0.9
6,115,500 + AO356_26855 0.24 -0.3
6,115,547 - AO356_26855 0.28 +0.2
6,115,547 - AO356_26855 0.28 +0.9
6,115,547 - AO356_26855 0.28 -0.1
6,115,644 + AO356_26855 0.37 -0.1
6,115,644 + AO356_26855 0.37 -1.0
6,115,661 - AO356_26855 0.39 -1.6
6,115,662 + AO356_26855 0.39 -0.4
6,115,663 - AO356_26855 0.39 -1.9
6,115,663 - AO356_26855 0.39 +0.1
6,115,845 - AO356_26855 0.56 +1.2
6,115,845 - AO356_26855 0.56 +0.2
6,115,945 + AO356_26855 0.65 -0.8
6,115,946 - AO356_26855 0.65 +0.1
6,116,093 - AO356_26855 0.79 -0.6
6,116,104 + AO356_26855 0.80 -0.1
6,116,104 + AO356_26855 0.80 -0.1
6,116,104 + AO356_26855 0.80 -0.9
6,116,193 - AO356_26855 0.88 +0.8
6,116,200 + AO356_26855 0.88 +0.0
6,116,211 + AO356_26855 0.89 +0.1
6,116,212 - AO356_26855 0.90 +1.1
6,116,212 - AO356_26855 0.90 -0.4
6,116,311 - -0.6
6,116,311 - -0.3
6,116,311 - +0.6
6,116,324 - +1.6
6,116,407 + -0.1
6,116,407 + +0.6
6,116,408 - +0.1
6,116,408 - +0.8
6,116,419 + +0.1
6,116,476 + AO356_26860 0.15 +1.2
6,116,476 + AO356_26860 0.15 +0.4
6,116,476 + AO356_26860 0.15 -1.1
6,116,476 + AO356_26860 0.15 +1.5
6,116,476 + AO356_26860 0.15 -0.9
6,116,476 + AO356_26860 0.15 +1.5
6,116,477 - AO356_26860 0.15 +2.1
6,116,477 - AO356_26860 0.15 +1.0
6,116,477 - AO356_26860 0.15 +0.7
6,116,479 + AO356_26860 0.15 -0.2
6,116,479 + AO356_26860 0.15 +0.1
6,116,590 + AO356_26860 0.28 -0.4
6,116,599 - AO356_26860 0.29 -0.5
6,116,692 + AO356_26860 0.39 +0.6
6,116,790 + AO356_26860 0.50 +1.2
6,116,791 - AO356_26860 0.51 -2.7
6,116,806 + AO356_26860 0.52 -0.1
6,116,807 - AO356_26860 0.52 +0.6
6,116,923 + AO356_26860 0.66 -1.1
6,116,923 + AO356_26860 0.66 -0.6
6,116,924 - AO356_26860 0.66 -0.0
6,116,924 - AO356_26860 0.66 +0.8
6,117,003 + AO356_26860 0.75 +1.0
6,117,004 - AO356_26860 0.75 +1.2
6,117,064 + AO356_26860 0.82 +0.4
6,117,065 - AO356_26860 0.82 +2.0
6,117,066 + AO356_26860 0.82 +1.2
6,117,067 - AO356_26860 0.82 +0.8
6,117,071 + AO356_26860 0.82 +0.3
6,117,072 - AO356_26860 0.82 +0.6
6,117,072 - AO356_26860 0.82 -1.6
6,117,156 - +1.0
6,117,156 - -1.0
6,117,156 - +0.1
6,117,242 + -0.6
6,117,242 + +0.3
6,117,243 - +0.5
6,117,243 - +0.4
6,117,243 - +0.9

Or see this region's nucleotide sequence