Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26750 and AO356_26755 are separated by 1 nucleotides AO356_26755 and AO356_26760 overlap by 4 nucleotides AO356_26760 and AO356_26765 are separated by 40 nucleotides
AO356_26750: AO356_26750 - ABC transporter, at 6,090,569 to 6,092,410
_26750
AO356_26755: AO356_26755 - DNA-directed RNA polymerase subunit alpha, at 6,092,412 to 6,093,287
_26755
AO356_26760: AO356_26760 - ABC transporter permease, at 6,093,284 to 6,094,240
_26760
AO356_26765: AO356_26765 - ABC transporter substrate-binding protein, at 6,094,281 to 6,095,924
_26765
Position (kb)
6093
6094
6095 Strain fitness (log2 ratio)
-2
-1
0
1 at 6092.705 kb on - strand, within AO356_26755 at 6092.743 kb on + strand, within AO356_26755 at 6092.743 kb on + strand, within AO356_26755 at 6092.803 kb on + strand, within AO356_26755 at 6092.803 kb on + strand, within AO356_26755 at 6093.082 kb on + strand, within AO356_26755 at 6093.352 kb on - strand at 6093.352 kb on - strand at 6093.442 kb on - strand, within AO356_26760 at 6093.484 kb on - strand, within AO356_26760 at 6093.687 kb on + strand, within AO356_26760 at 6093.688 kb on - strand, within AO356_26760 at 6093.729 kb on + strand, within AO356_26760 at 6093.729 kb on + strand, within AO356_26760 at 6094.260 kb on - strand at 6094.315 kb on + strand at 6094.315 kb on + strand at 6094.316 kb on - strand at 6094.423 kb on - strand at 6094.444 kb on + strand at 6094.445 kb on - strand at 6095.002 kb on + strand, within AO356_26765 at 6095.002 kb on + strand, within AO356_26765 at 6095.002 kb on + strand, within AO356_26765 at 6095.003 kb on - strand, within AO356_26765 at 6095.003 kb on - strand, within AO356_26765 at 6095.192 kb on + strand, within AO356_26765
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,092,705 - AO356_26755 0.33 +0.8 6,092,743 + AO356_26755 0.38 -1.9 6,092,743 + AO356_26755 0.38 -0.9 6,092,803 + AO356_26755 0.45 +0.3 6,092,803 + AO356_26755 0.45 +0.7 6,093,082 + AO356_26755 0.76 +1.2 6,093,352 - +0.2 6,093,352 - +0.5 6,093,442 - AO356_26760 0.17 -0.4 6,093,484 - AO356_26760 0.21 -0.8 6,093,687 + AO356_26760 0.42 -0.0 6,093,688 - AO356_26760 0.42 -0.5 6,093,729 + AO356_26760 0.46 -0.2 6,093,729 + AO356_26760 0.46 +0.1 6,094,260 - +0.2 6,094,315 + +0.4 6,094,315 + -0.0 6,094,316 - +0.2 6,094,423 - +1.0 6,094,444 + -0.1 6,094,445 - +0.7 6,095,002 + AO356_26765 0.44 -0.2 6,095,002 + AO356_26765 0.44 -1.4 6,095,002 + AO356_26765 0.44 +0.5 6,095,003 - AO356_26765 0.44 -0.2 6,095,003 - AO356_26765 0.44 +0.1 6,095,192 + AO356_26765 0.55 -0.8
Or see this region's nucleotide sequence