Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26450

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26445 and AO356_26450 are separated by 32 nucleotidesAO356_26450 and AO356_26455 are separated by 145 nucleotidesAO356_26455 and AO356_26460 overlap by 4 nucleotides AO356_26445: AO356_26445 - FAD-dependent oxidoreductase, at 5,988,387 to 5,989,493 _26445 AO356_26450: AO356_26450 - hypothetical protein, at 5,989,526 to 5,991,073 _26450 AO356_26455: AO356_26455 - hypothetical protein, at 5,991,219 to 5,991,455 _26455 AO356_26460: AO356_26460 - pyridine nucleotide-disulfide oxidoreductase, at 5,991,452 to 5,992,762 _26460 Position (kb) 5989 5990 5991 5992Strain fitness (log2 ratio) -2 -1 0 1 2at 5988.602 kb on - strand, within AO356_26445at 5988.619 kb on + strand, within AO356_26445at 5988.619 kb on + strand, within AO356_26445at 5988.620 kb on - strand, within AO356_26445at 5988.797 kb on - strand, within AO356_26445at 5988.797 kb on - strand, within AO356_26445at 5988.797 kb on - strand, within AO356_26445at 5988.985 kb on + strand, within AO356_26445at 5988.986 kb on - strand, within AO356_26445at 5989.076 kb on - strand, within AO356_26445at 5989.140 kb on + strand, within AO356_26445at 5989.141 kb on - strand, within AO356_26445at 5989.141 kb on - strand, within AO356_26445at 5989.141 kb on - strand, within AO356_26445at 5989.141 kb on - strand, within AO356_26445at 5989.235 kb on + strand, within AO356_26445at 5989.236 kb on - strand, within AO356_26445at 5989.270 kb on + strand, within AO356_26445at 5989.328 kb on - strand, within AO356_26445at 5989.470 kb on + strandat 5989.528 kb on - strandat 5989.894 kb on + strand, within AO356_26450at 5989.991 kb on + strand, within AO356_26450at 5989.991 kb on + strand, within AO356_26450at 5990.431 kb on - strand, within AO356_26450at 5990.933 kb on - strandat 5991.078 kb on + strandat 5991.203 kb on - strandat 5991.257 kb on - strand, within AO356_26455at 5991.265 kb on - strand, within AO356_26455at 5991.479 kb on + strandat 5991.480 kb on - strandat 5991.480 kb on - strandat 5991.586 kb on + strand, within AO356_26460at 5991.587 kb on - strand, within AO356_26460at 5991.672 kb on + strand, within AO356_26460at 5991.672 kb on + strand, within AO356_26460at 5991.673 kb on - strand, within AO356_26460at 5991.801 kb on + strand, within AO356_26460at 5991.802 kb on - strand, within AO356_26460at 5991.802 kb on - strand, within AO356_26460at 5991.802 kb on - strand, within AO356_26460at 5991.802 kb on - strand, within AO356_26460at 5991.802 kb on - strand, within AO356_26460

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,988,602 - AO356_26445 0.19 -0.7
5,988,619 + AO356_26445 0.21 -1.2
5,988,619 + AO356_26445 0.21 +0.1
5,988,620 - AO356_26445 0.21 +0.5
5,988,797 - AO356_26445 0.37 +1.0
5,988,797 - AO356_26445 0.37 -1.4
5,988,797 - AO356_26445 0.37 +0.2
5,988,985 + AO356_26445 0.54 -0.1
5,988,986 - AO356_26445 0.54 -0.9
5,989,076 - AO356_26445 0.62 +1.2
5,989,140 + AO356_26445 0.68 +0.3
5,989,141 - AO356_26445 0.68 +1.0
5,989,141 - AO356_26445 0.68 -0.4
5,989,141 - AO356_26445 0.68 -0.5
5,989,141 - AO356_26445 0.68 +0.3
5,989,235 + AO356_26445 0.77 +2.0
5,989,236 - AO356_26445 0.77 +0.2
5,989,270 + AO356_26445 0.80 +0.7
5,989,328 - AO356_26445 0.85 -0.0
5,989,470 + -0.8
5,989,528 - +1.4
5,989,894 + AO356_26450 0.24 -1.9
5,989,991 + AO356_26450 0.30 -0.8
5,989,991 + AO356_26450 0.30 -0.7
5,990,431 - AO356_26450 0.58 -0.2
5,990,933 - +0.5
5,991,078 + +0.0
5,991,203 - -0.7
5,991,257 - AO356_26455 0.16 +1.1
5,991,265 - AO356_26455 0.19 -0.8
5,991,479 + -0.4
5,991,480 - +0.7
5,991,480 - +0.1
5,991,586 + AO356_26460 0.10 +0.4
5,991,587 - AO356_26460 0.10 +0.3
5,991,672 + AO356_26460 0.17 +1.1
5,991,672 + AO356_26460 0.17 -0.2
5,991,673 - AO356_26460 0.17 -0.1
5,991,801 + AO356_26460 0.27 -0.1
5,991,802 - AO356_26460 0.27 -1.1
5,991,802 - AO356_26460 0.27 +1.6
5,991,802 - AO356_26460 0.27 -0.1
5,991,802 - AO356_26460 0.27 +0.2
5,991,802 - AO356_26460 0.27 -1.4

Or see this region's nucleotide sequence