Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23220 and AO356_23225 are separated by 287 nucleotides AO356_23225 and AO356_23230 are separated by 88 nucleotides AO356_23230 and AO356_23235 are separated by 131 nucleotides AO356_23235 and AO356_23240 are separated by 458 nucleotides
AO356_23220: AO356_23220 - chemotaxis protein, at 5,198,428 to 5,200,032
_23220
AO356_23225: AO356_23225 - hypothetical protein, at 5,200,320 to 5,200,556
_23225
AO356_23230: AO356_23230 - hypothetical protein, at 5,200,645 to 5,200,875
_23230
AO356_23235: AO356_23235 - hypothetical protein, at 5,201,007 to 5,201,201
_23235
AO356_23240: AO356_23240 - hypothetical protein, at 5,201,660 to 5,202,109
_23240
Position (kb)
5201
5202 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5200.030 kb on + strand at 5200.106 kb on + strand at 5200.106 kb on + strand at 5200.107 kb on - strand at 5200.198 kb on + strand at 5200.198 kb on + strand at 5200.198 kb on + strand at 5200.286 kb on - strand at 5200.286 kb on - strand at 5200.286 kb on - strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.287 kb on + strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.288 kb on - strand at 5200.322 kb on - strand at 5200.325 kb on + strand at 5200.326 kb on - strand at 5200.326 kb on - strand at 5200.602 kb on + strand at 5200.602 kb on + strand at 5200.608 kb on + strand at 5200.608 kb on + strand at 5200.609 kb on - strand at 5200.609 kb on - strand at 5200.901 kb on - strand at 5200.980 kb on + strand at 5200.981 kb on - strand at 5200.981 kb on - strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5200.999 kb on + strand at 5201.000 kb on - strand at 5201.000 kb on - strand at 5201.000 kb on - strand at 5201.038 kb on + strand, within AO356_23235 at 5201.038 kb on + strand, within AO356_23235 at 5201.039 kb on - strand, within AO356_23235 at 5201.039 kb on - strand, within AO356_23235 at 5201.039 kb on - strand, within AO356_23235 at 5201.051 kb on + strand, within AO356_23235 at 5201.073 kb on + strand, within AO356_23235 at 5201.073 kb on + strand, within AO356_23235 at 5201.271 kb on + strand at 5201.280 kb on + strand at 5201.305 kb on - strand at 5201.338 kb on - strand at 5201.341 kb on + strand at 5201.342 kb on - strand at 5201.342 kb on - strand at 5201.384 kb on + strand at 5201.407 kb on + strand at 5201.407 kb on + strand at 5201.407 kb on + strand at 5201.407 kb on + strand at 5201.408 kb on - strand at 5201.408 kb on - strand at 5201.411 kb on - strand at 5201.411 kb on - strand at 5201.496 kb on + strand at 5201.496 kb on + strand at 5201.497 kb on - strand at 5201.497 kb on - strand at 5201.568 kb on - strand at 5201.646 kb on + strand at 5201.646 kb on + strand at 5201.646 kb on + strand at 5201.646 kb on + strand at 5201.647 kb on - strand at 5201.647 kb on - strand at 5201.647 kb on - strand at 5201.647 kb on - strand at 5201.650 kb on + strand at 5201.650 kb on + strand at 5201.650 kb on + strand at 5201.651 kb on - strand at 5201.651 kb on - strand at 5201.651 kb on - strand at 5201.670 kb on + strand at 5201.670 kb on + strand at 5201.670 kb on + strand at 5201.670 kb on + strand at 5201.677 kb on - strand at 5201.729 kb on + strand, within AO356_23240 at 5201.755 kb on + strand, within AO356_23240 at 5201.756 kb on - strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.759 kb on + strand, within AO356_23240 at 5201.760 kb on - strand, within AO356_23240 at 5201.760 kb on - strand, within AO356_23240 at 5201.760 kb on - strand, within AO356_23240 at 5201.912 kb on + strand, within AO356_23240 at 5201.913 kb on - strand, within AO356_23240 at 5202.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,200,030 + -0.2 5,200,106 + +0.3 5,200,106 + +0.7 5,200,107 - -0.1 5,200,198 + +0.1 5,200,198 + +0.0 5,200,198 + -0.3 5,200,286 - +0.9 5,200,286 - +0.4 5,200,286 - -0.8 5,200,287 + +0.1 5,200,287 + -2.5 5,200,287 + -0.4 5,200,287 + -0.3 5,200,287 + +0.5 5,200,287 + -1.1 5,200,287 + +0.5 5,200,287 + +0.7 5,200,287 + +2.0 5,200,287 + -0.2 5,200,287 + -0.2 5,200,287 + -0.1 5,200,288 - +0.4 5,200,288 - +0.9 5,200,288 - +0.1 5,200,288 - +0.2 5,200,288 - -0.1 5,200,288 - +2.2 5,200,288 - +0.2 5,200,322 - +0.2 5,200,325 + -1.1 5,200,326 - -0.4 5,200,326 - +0.3 5,200,602 + +0.2 5,200,602 + -0.7 5,200,608 + +0.2 5,200,608 + -0.2 5,200,609 - +0.5 5,200,609 - +0.6 5,200,901 - +0.5 5,200,980 + +0.3 5,200,981 - +0.5 5,200,981 - +0.5 5,200,999 + -0.4 5,200,999 + +1.5 5,200,999 + -0.2 5,200,999 + -0.4 5,200,999 + -0.0 5,200,999 + -0.7 5,200,999 + -0.7 5,200,999 + -0.7 5,201,000 - -1.2 5,201,000 - -0.0 5,201,000 - +0.6 5,201,038 + AO356_23235 0.16 +0.6 5,201,038 + AO356_23235 0.16 -0.3 5,201,039 - AO356_23235 0.16 -0.3 5,201,039 - AO356_23235 0.16 -0.4 5,201,039 - AO356_23235 0.16 -1.2 5,201,051 + AO356_23235 0.23 -0.3 5,201,073 + AO356_23235 0.34 -0.4 5,201,073 + AO356_23235 0.34 -0.5 5,201,271 + -0.9 5,201,280 + +0.2 5,201,305 - -0.6 5,201,338 - +1.5 5,201,341 + -0.6 5,201,342 - -1.3 5,201,342 - -0.7 5,201,384 + -1.8 5,201,407 + -0.5 5,201,407 + +1.0 5,201,407 + +0.9 5,201,407 + -0.3 5,201,408 - +0.2 5,201,408 - +0.1 5,201,411 - -0.0 5,201,411 - +0.1 5,201,496 + +0.4 5,201,496 + +0.9 5,201,497 - -0.6 5,201,497 - -1.6 5,201,568 - -0.3 5,201,646 + -0.6 5,201,646 + -1.7 5,201,646 + +0.6 5,201,646 + +0.9 5,201,647 - -0.2 5,201,647 - -0.9 5,201,647 - -1.9 5,201,647 - +0.4 5,201,650 + -0.1 5,201,650 + -0.4 5,201,650 + -0.7 5,201,651 - +1.1 5,201,651 - -0.7 5,201,651 - +0.1 5,201,670 + +0.1 5,201,670 + +0.5 5,201,670 + -0.6 5,201,670 + -0.4 5,201,677 - -0.1 5,201,729 + AO356_23240 0.15 -0.6 5,201,755 + AO356_23240 0.21 -0.0 5,201,756 - AO356_23240 0.21 -0.7 5,201,759 + AO356_23240 0.22 +0.5 5,201,759 + AO356_23240 0.22 -0.9 5,201,759 + AO356_23240 0.22 -0.0 5,201,759 + AO356_23240 0.22 -0.2 5,201,759 + AO356_23240 0.22 -0.0 5,201,759 + AO356_23240 0.22 -0.7 5,201,759 + AO356_23240 0.22 -0.8 5,201,759 + AO356_23240 0.22 -1.4 5,201,759 + AO356_23240 0.22 -0.2 5,201,759 + AO356_23240 0.22 -0.1 5,201,760 - AO356_23240 0.22 -0.2 5,201,760 - AO356_23240 0.22 -0.5 5,201,760 - AO356_23240 0.22 -0.0 5,201,912 + AO356_23240 0.56 +0.3 5,201,913 - AO356_23240 0.56 -0.0 5,202,193 - -0.0
Or see this region's nucleotide sequence