Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22670

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22665 and AO356_22670 are separated by 33 nucleotidesAO356_22670 and AO356_22675 are separated by 28 nucleotidesAO356_22675 and AO356_22680 are separated by 15 nucleotidesAO356_22680 and AO356_22685 are separated by 11 nucleotides AO356_22665: AO356_22665 - chemotaxis protein, at 5,063,697 to 5,065,355 _22665 AO356_22670: AO356_22670 - chemotaxis protein CheA, at 5,065,389 to 5,067,491 _22670 AO356_22675: AO356_22675 - sulfate transporter, at 5,067,520 to 5,067,804 _22675 AO356_22680: AO356_22680 - chemotaxis protein CheY, at 5,067,820 to 5,068,188 _22680 AO356_22685: AO356_22685 - chemotaxis protein, at 5,068,200 to 5,069,417 _22685 Position (kb) 5065 5066 5067 5068Strain fitness (log2 ratio) -2 -1 0 1at 5064.552 kb on - strand, within AO356_22665at 5064.979 kb on + strand, within AO356_22665at 5064.980 kb on - strand, within AO356_22665at 5065.049 kb on - strand, within AO356_22665at 5065.049 kb on - strand, within AO356_22665at 5065.334 kb on + strandat 5065.334 kb on + strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.342 kb on + strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.364 kb on - strandat 5065.364 kb on - strandat 5065.364 kb on - strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.410 kb on + strandat 5065.410 kb on + strandat 5065.410 kb on + strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.468 kb on - strandat 5065.766 kb on + strand, within AO356_22670at 5065.767 kb on - strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.799 kb on - strand, within AO356_22670at 5066.017 kb on + strand, within AO356_22670at 5066.018 kb on - strand, within AO356_22670at 5066.018 kb on - strand, within AO356_22670at 5066.150 kb on - strand, within AO356_22670at 5066.150 kb on - strand, within AO356_22670at 5066.214 kb on + strand, within AO356_22670at 5066.215 kb on - strand, within AO356_22670at 5066.215 kb on - strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.575 kb on + strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.576 kb on - strand, within AO356_22670at 5066.870 kb on - strand, within AO356_22670at 5066.956 kb on + strand, within AO356_22670at 5067.103 kb on + strand, within AO356_22670at 5067.103 kb on + strand, within AO356_22670at 5067.103 kb on + strand, within AO356_22670at 5067.104 kb on - strand, within AO356_22670at 5067.737 kb on + strand, within AO356_22675at 5067.792 kb on - strandat 5067.968 kb on + strand, within AO356_22680at 5067.969 kb on - strand, within AO356_22680at 5067.969 kb on - strand, within AO356_22680at 5068.175 kb on - strandat 5068.183 kb on - strandat 5068.201 kb on + strandat 5068.202 kb on - strandat 5068.212 kb on + strandat 5068.212 kb on + strandat 5068.213 kb on - strandat 5068.213 kb on - strandat 5068.213 kb on - strandat 5068.279 kb on + strandat 5068.279 kb on + strandat 5068.280 kb on - strandat 5068.280 kb on - strandat 5068.280 kb on - strandat 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.377 kb on + strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685at 5068.378 kb on - strand, within AO356_22685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,064,552 - AO356_22665 0.52 +0.4
5,064,979 + AO356_22665 0.77 +1.0
5,064,980 - AO356_22665 0.77 -1.0
5,065,049 - AO356_22665 0.81 +0.5
5,065,049 - AO356_22665 0.81 -0.7
5,065,334 + -0.0
5,065,334 + -1.0
5,065,335 - +0.3
5,065,335 - -0.1
5,065,335 - -0.1
5,065,335 - +0.6
5,065,342 + +1.7
5,065,343 - -0.6
5,065,343 - -0.1
5,065,343 - -1.2
5,065,343 - +0.4
5,065,343 - +0.5
5,065,363 + -0.4
5,065,363 + -0.5
5,065,363 + +0.5
5,065,363 + -0.3
5,065,364 - +0.1
5,065,364 - +0.9
5,065,364 - -0.3
5,065,382 + +1.5
5,065,382 + -0.2
5,065,382 + +0.1
5,065,382 + -0.6
5,065,382 + -0.3
5,065,410 + -0.3
5,065,410 + +0.5
5,065,410 + +0.7
5,065,411 - +0.0
5,065,411 - +0.2
5,065,411 - -0.4
5,065,411 - +0.0
5,065,468 - -0.8
5,065,766 + AO356_22670 0.18 +0.6
5,065,767 - AO356_22670 0.18 -0.9
5,065,798 + AO356_22670 0.19 +0.2
5,065,798 + AO356_22670 0.19 +0.4
5,065,798 + AO356_22670 0.19 +0.5
5,065,798 + AO356_22670 0.19 +0.1
5,065,798 + AO356_22670 0.19 +0.4
5,065,798 + AO356_22670 0.19 +0.2
5,065,799 - AO356_22670 0.19 -1.2
5,066,017 + AO356_22670 0.30 +0.1
5,066,018 - AO356_22670 0.30 +0.2
5,066,018 - AO356_22670 0.30 +0.8
5,066,150 - AO356_22670 0.36 +0.1
5,066,150 - AO356_22670 0.36 -0.3
5,066,214 + AO356_22670 0.39 -0.1
5,066,215 - AO356_22670 0.39 +0.9
5,066,215 - AO356_22670 0.39 +0.3
5,066,575 + AO356_22670 0.56 +0.2
5,066,575 + AO356_22670 0.56 -0.1
5,066,575 + AO356_22670 0.56 -0.7
5,066,575 + AO356_22670 0.56 +0.1
5,066,575 + AO356_22670 0.56 -0.0
5,066,575 + AO356_22670 0.56 +0.1
5,066,575 + AO356_22670 0.56 -0.6
5,066,575 + AO356_22670 0.56 -0.1
5,066,575 + AO356_22670 0.56 +0.3
5,066,575 + AO356_22670 0.56 +0.3
5,066,575 + AO356_22670 0.56 +0.1
5,066,576 - AO356_22670 0.56 -0.2
5,066,576 - AO356_22670 0.56 -0.2
5,066,576 - AO356_22670 0.56 +0.4
5,066,576 - AO356_22670 0.56 -0.2
5,066,576 - AO356_22670 0.56 -1.1
5,066,576 - AO356_22670 0.56 +0.2
5,066,870 - AO356_22670 0.70 +0.4
5,066,956 + AO356_22670 0.75 +0.4
5,067,103 + AO356_22670 0.82 +0.5
5,067,103 + AO356_22670 0.82 -0.7
5,067,103 + AO356_22670 0.82 -0.1
5,067,104 - AO356_22670 0.82 -0.4
5,067,737 + AO356_22675 0.76 +0.6
5,067,792 - -1.1
5,067,968 + AO356_22680 0.40 -0.1
5,067,969 - AO356_22680 0.40 -0.2
5,067,969 - AO356_22680 0.40 -0.7
5,068,175 - -1.7
5,068,183 - -0.1
5,068,201 + -0.0
5,068,202 - -1.4
5,068,212 + -0.8
5,068,212 + -0.6
5,068,213 - +0.3
5,068,213 - -0.0
5,068,213 - -0.2
5,068,279 + +0.1
5,068,279 + -0.8
5,068,280 - +0.7
5,068,280 - -0.6
5,068,280 - +0.0
5,068,377 + AO356_22685 0.15 +0.4
5,068,377 + AO356_22685 0.15 +1.4
5,068,377 + AO356_22685 0.15 +0.9
5,068,377 + AO356_22685 0.15 -0.3
5,068,377 + AO356_22685 0.15 -2.1
5,068,377 + AO356_22685 0.15 -0.9
5,068,377 + AO356_22685 0.15 -1.2
5,068,378 - AO356_22685 0.15 -2.2
5,068,378 - AO356_22685 0.15 -1.0
5,068,378 - AO356_22685 0.15 +0.1
5,068,378 - AO356_22685 0.15 +0.8
5,068,378 - AO356_22685 0.15 +0.1
5,068,378 - AO356_22685 0.15 -0.3
5,068,378 - AO356_22685 0.15 -0.2
5,068,378 - AO356_22685 0.15 +1.1
5,068,378 - AO356_22685 0.15 -0.6

Or see this region's nucleotide sequence