Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22650

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22645 and AO356_22650 are separated by 2 nucleotidesAO356_22650 and AO356_22655 overlap by 4 nucleotidesAO356_22655 and AO356_22660 overlap by 4 nucleotides AO356_22645: AO356_22645 - chemotaxis protein CheY, at 5,060,718 to 5,061,791 _22645 AO356_22650: AO356_22650 - chemotaxis protein CheD, at 5,061,794 to 5,062,291 _22650 AO356_22655: AO356_22655 - SAM-dependent methyltransferase, at 5,062,288 to 5,063,124 _22655 AO356_22660: AO356_22660 - chemotaxis protein CheW, at 5,063,121 to 5,063,657 _22660 Position (kb) 5061 5062 5063Strain fitness (log2 ratio) -2 -1 0 1at 5060.955 kb on + strand, within AO356_22645at 5060.955 kb on + strand, within AO356_22645at 5060.955 kb on + strand, within AO356_22645at 5060.955 kb on + strand, within AO356_22645at 5060.955 kb on + strand, within AO356_22645at 5060.956 kb on - strand, within AO356_22645at 5060.956 kb on - strand, within AO356_22645at 5060.956 kb on - strand, within AO356_22645at 5060.956 kb on - strand, within AO356_22645at 5061.013 kb on + strand, within AO356_22645at 5061.013 kb on + strand, within AO356_22645at 5061.013 kb on + strand, within AO356_22645at 5061.013 kb on + strand, within AO356_22645at 5061.014 kb on - strand, within AO356_22645at 5061.659 kb on + strand, within AO356_22645at 5061.659 kb on + strand, within AO356_22645at 5061.659 kb on + strand, within AO356_22645at 5061.732 kb on + strandat 5061.771 kb on + strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5061.772 kb on - strandat 5062.024 kb on - strand, within AO356_22650at 5062.024 kb on - strand, within AO356_22650at 5062.257 kb on + strandat 5062.258 kb on - strandat 5062.373 kb on + strand, within AO356_22655at 5062.373 kb on + strand, within AO356_22655at 5062.439 kb on + strand, within AO356_22655at 5062.439 kb on + strand, within AO356_22655at 5062.440 kb on - strand, within AO356_22655at 5062.590 kb on - strand, within AO356_22655at 5062.590 kb on - strand, within AO356_22655at 5062.741 kb on - strand, within AO356_22655at 5062.741 kb on - strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.937 kb on + strand, within AO356_22655at 5062.938 kb on - strand, within AO356_22655at 5063.113 kb on - strandat 5063.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,060,955 + AO356_22645 0.22 -1.2
5,060,955 + AO356_22645 0.22 +0.8
5,060,955 + AO356_22645 0.22 +1.0
5,060,955 + AO356_22645 0.22 -0.3
5,060,955 + AO356_22645 0.22 +0.4
5,060,956 - AO356_22645 0.22 +0.1
5,060,956 - AO356_22645 0.22 -0.5
5,060,956 - AO356_22645 0.22 -0.7
5,060,956 - AO356_22645 0.22 +0.3
5,061,013 + AO356_22645 0.27 +0.2
5,061,013 + AO356_22645 0.27 -0.5
5,061,013 + AO356_22645 0.27 -0.3
5,061,013 + AO356_22645 0.27 +1.5
5,061,014 - AO356_22645 0.28 +0.5
5,061,659 + AO356_22645 0.88 -0.4
5,061,659 + AO356_22645 0.88 -0.7
5,061,659 + AO356_22645 0.88 -0.1
5,061,732 + -0.2
5,061,771 + +0.8
5,061,772 - +0.7
5,061,772 - -0.4
5,061,772 - -0.9
5,061,772 - +0.0
5,061,772 - +0.2
5,061,772 - +0.3
5,062,024 - AO356_22650 0.46 -0.9
5,062,024 - AO356_22650 0.46 -1.0
5,062,257 + -0.4
5,062,258 - +0.7
5,062,373 + AO356_22655 0.10 -0.3
5,062,373 + AO356_22655 0.10 -0.2
5,062,439 + AO356_22655 0.18 +0.1
5,062,439 + AO356_22655 0.18 +0.4
5,062,440 - AO356_22655 0.18 +0.1
5,062,590 - AO356_22655 0.36 +0.7
5,062,590 - AO356_22655 0.36 +1.4
5,062,741 - AO356_22655 0.54 +1.0
5,062,741 - AO356_22655 0.54 +0.4
5,062,742 + AO356_22655 0.54 -1.8
5,062,742 + AO356_22655 0.54 -0.9
5,062,742 + AO356_22655 0.54 -0.5
5,062,743 - AO356_22655 0.54 +0.1
5,062,743 - AO356_22655 0.54 +1.0
5,062,743 - AO356_22655 0.54 -0.4
5,062,813 + AO356_22655 0.63 +0.1
5,062,813 + AO356_22655 0.63 -1.1
5,062,814 - AO356_22655 0.63 -0.2
5,062,814 - AO356_22655 0.63 -0.3
5,062,814 - AO356_22655 0.63 -0.8
5,062,814 - AO356_22655 0.63 +0.7
5,062,897 + AO356_22655 0.73 +0.5
5,062,897 + AO356_22655 0.73 +0.3
5,062,898 - AO356_22655 0.73 +1.1
5,062,898 - AO356_22655 0.73 +0.4
5,062,937 + AO356_22655 0.78 +0.2
5,062,938 - AO356_22655 0.78 +0.6
5,063,113 - +0.7
5,063,113 - -0.8

Or see this region's nucleotide sequence