Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21780 and AO356_21785 are separated by 128 nucleotides AO356_21785 and AO356_21790 overlap by 1 nucleotides AO356_21790 and AO356_21795 overlap by 4 nucleotides
AO356_21780: AO356_21780 - nitrate ABC transporter substrate-binding protein, at 4,875,231 to 4,876,637
_21780
AO356_21785: AO356_21785 - ABC transporter permease, at 4,876,766 to 4,877,548
_21785
AO356_21790: AO356_21790 - sulfonate ABC transporter ATP-binding protein, at 4,877,548 to 4,878,396
_21790
AO356_21795: AO356_21795 - PBS lyase, at 4,878,393 to 4,879,355
_21795
Position (kb) 4876
4877
4878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4875.877 kb on - strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.934 kb on - strand, within AO356_21780 at 4875.934 kb on - strand, within AO356_21780 at 4876.020 kb on + strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.068 kb on + strand, within AO356_21780 at 4876.068 kb on + strand, within AO356_21780 at 4876.069 kb on - strand, within AO356_21780 at 4876.199 kb on + strand, within AO356_21780 at 4876.200 kb on - strand, within AO356_21780 at 4876.200 kb on - strand, within AO356_21780 at 4876.219 kb on - strand, within AO356_21780 at 4876.254 kb on + strand, within AO356_21780 at 4876.272 kb on - strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.384 kb on - strand, within AO356_21780 at 4876.455 kb on + strand, within AO356_21780 at 4876.456 kb on - strand, within AO356_21780 at 4876.456 kb on - strand, within AO356_21780 at 4877.199 kb on + strand, within AO356_21785 at 4877.199 kb on + strand, within AO356_21785 at 4877.199 kb on + strand, within AO356_21785 at 4877.200 kb on - strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.400 kb on - strand, within AO356_21785 at 4877.400 kb on - strand, within AO356_21785 at 4877.415 kb on - strand, within AO356_21785 at 4877.430 kb on - strand, within AO356_21785 at 4878.084 kb on + strand, within AO356_21790 at 4878.085 kb on - strand, within AO356_21790 at 4878.085 kb on - strand, within AO356_21790 at 4878.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,875,877 - AO356_21780 0.46 -0.5 4,875,933 + AO356_21780 0.50 +0.3 4,875,933 + AO356_21780 0.50 +0.2 4,875,933 + AO356_21780 0.50 -0.8 4,875,934 - AO356_21780 0.50 -0.4 4,875,934 - AO356_21780 0.50 -0.4 4,876,020 + AO356_21780 0.56 +1.0 4,876,021 - AO356_21780 0.56 +0.0 4,876,021 - AO356_21780 0.56 +1.5 4,876,021 - AO356_21780 0.56 +0.5 4,876,068 + AO356_21780 0.59 +0.4 4,876,068 + AO356_21780 0.59 +0.4 4,876,069 - AO356_21780 0.60 +1.0 4,876,199 + AO356_21780 0.69 +0.5 4,876,200 - AO356_21780 0.69 -1.0 4,876,200 - AO356_21780 0.69 +1.0 4,876,219 - AO356_21780 0.70 -0.4 4,876,254 + AO356_21780 0.73 +0.2 4,876,272 - AO356_21780 0.74 -0.1 4,876,275 + AO356_21780 0.74 -1.8 4,876,275 + AO356_21780 0.74 +1.3 4,876,275 + AO356_21780 0.74 -0.8 4,876,275 + AO356_21780 0.74 -0.5 4,876,276 - AO356_21780 0.74 -2.5 4,876,276 - AO356_21780 0.74 +0.2 4,876,276 - AO356_21780 0.74 -0.4 4,876,384 - AO356_21780 0.82 +0.3 4,876,455 + AO356_21780 0.87 +1.9 4,876,456 - AO356_21780 0.87 -0.7 4,876,456 - AO356_21780 0.87 -0.3 4,877,199 + AO356_21785 0.55 +1.1 4,877,199 + AO356_21785 0.55 +0.4 4,877,199 + AO356_21785 0.55 -0.7 4,877,200 - AO356_21785 0.55 -1.4 4,877,399 + AO356_21785 0.81 -1.3 4,877,399 + AO356_21785 0.81 +0.8 4,877,399 + AO356_21785 0.81 -2.2 4,877,399 + AO356_21785 0.81 -0.3 4,877,400 - AO356_21785 0.81 -0.8 4,877,400 - AO356_21785 0.81 +0.2 4,877,415 - AO356_21785 0.83 +0.4 4,877,430 - AO356_21785 0.85 +0.6 4,878,084 + AO356_21790 0.63 -0.5 4,878,085 - AO356_21790 0.63 -1.5 4,878,085 - AO356_21790 0.63 +0.1 4,878,404 - +0.4
Or see this region's nucleotide sequence