Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06870

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06865 and AO356_06870 are separated by 34 nucleotidesAO356_06870 and AO356_06875 are separated by 71 nucleotides AO356_06865: AO356_06865 - ABC transporter permease, at 1,514,442 to 1,515,479 _06865 AO356_06870: AO356_06870 - ABC transporter substrate-binding protein, at 1,515,514 to 1,517,136 _06870 AO356_06875: AO356_06875 - mandelate racemase, at 1,517,208 to 1,518,362 _06875 Position (kb) 1515 1516 1517 1518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1514.576 kb on - strand, within AO356_06865at 1514.642 kb on - strand, within AO356_06865at 1514.746 kb on + strand, within AO356_06865at 1514.746 kb on + strand, within AO356_06865at 1514.747 kb on - strand, within AO356_06865at 1514.797 kb on + strand, within AO356_06865at 1514.798 kb on - strand, within AO356_06865at 1514.933 kb on - strand, within AO356_06865at 1514.980 kb on + strand, within AO356_06865at 1514.980 kb on + strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1515.245 kb on - strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.305 kb on - strand, within AO356_06865at 1515.527 kb on + strandat 1515.569 kb on + strandat 1515.570 kb on - strandat 1515.570 kb on - strandat 1515.648 kb on - strandat 1515.648 kb on - strandat 1515.648 kb on - strandat 1515.803 kb on + strand, within AO356_06870at 1515.803 kb on + strand, within AO356_06870at 1515.803 kb on + strand, within AO356_06870at 1515.803 kb on + strand, within AO356_06870at 1515.803 kb on + strand, within AO356_06870at 1515.804 kb on - strand, within AO356_06870at 1515.804 kb on - strand, within AO356_06870at 1515.804 kb on - strand, within AO356_06870at 1515.899 kb on + strand, within AO356_06870at 1515.899 kb on + strand, within AO356_06870at 1515.899 kb on + strand, within AO356_06870at 1515.900 kb on - strand, within AO356_06870at 1516.145 kb on + strand, within AO356_06870at 1516.207 kb on + strand, within AO356_06870at 1516.253 kb on + strand, within AO356_06870at 1516.254 kb on - strand, within AO356_06870at 1516.254 kb on - strand, within AO356_06870at 1516.254 kb on - strand, within AO356_06870at 1516.256 kb on + strand, within AO356_06870at 1516.257 kb on - strand, within AO356_06870at 1516.439 kb on + strand, within AO356_06870at 1516.439 kb on + strand, within AO356_06870at 1516.938 kb on - strand, within AO356_06870at 1516.938 kb on - strand, within AO356_06870at 1517.152 kb on + strandat 1517.152 kb on + strandat 1517.152 kb on + strandat 1517.153 kb on - strandat 1517.153 kb on - strandat 1517.153 kb on - strandat 1517.154 kb on + strandat 1517.154 kb on + strandat 1517.154 kb on + strandat 1517.154 kb on + strandat 1517.155 kb on - strandat 1517.155 kb on - strandat 1517.155 kb on - strandat 1517.158 kb on + strandat 1517.158 kb on + strandat 1517.158 kb on + strandat 1517.158 kb on + strandat 1517.159 kb on - strandat 1517.159 kb on - strandat 1517.159 kb on - strandat 1517.159 kb on - strandat 1517.160 kb on + strandat 1517.161 kb on - strandat 1517.239 kb on + strandat 1517.239 kb on + strandat 1517.239 kb on + strandat 1517.240 kb on - strandat 1517.240 kb on - strandat 1517.347 kb on + strand, within AO356_06875at 1517.635 kb on + strand, within AO356_06875at 1517.635 kb on + strand, within AO356_06875at 1517.635 kb on + strand, within AO356_06875at 1517.635 kb on + strand, within AO356_06875at 1517.636 kb on - strand, within AO356_06875at 1517.636 kb on - strand, within AO356_06875at 1517.636 kb on - strand, within AO356_06875at 1517.731 kb on + strand, within AO356_06875at 1517.731 kb on + strand, within AO356_06875at 1517.732 kb on - strand, within AO356_06875at 1517.732 kb on - strand, within AO356_06875at 1517.999 kb on + strand, within AO356_06875at 1518.000 kb on - strand, within AO356_06875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,514,576 - AO356_06865 0.13 -0.2
1,514,642 - AO356_06865 0.19 +0.4
1,514,746 + AO356_06865 0.29 +0.7
1,514,746 + AO356_06865 0.29 +0.1
1,514,747 - AO356_06865 0.29 +0.2
1,514,797 + AO356_06865 0.34 +0.0
1,514,798 - AO356_06865 0.34 +0.6
1,514,933 - AO356_06865 0.47 +0.8
1,514,980 + AO356_06865 0.52 -0.7
1,514,980 + AO356_06865 0.52 -0.4
1,514,981 - AO356_06865 0.52 +0.4
1,514,981 - AO356_06865 0.52 -0.2
1,514,981 - AO356_06865 0.52 +0.3
1,514,981 - AO356_06865 0.52 -0.2
1,515,245 - AO356_06865 0.77 +0.1
1,515,292 + AO356_06865 0.82 -0.3
1,515,292 + AO356_06865 0.82 +0.4
1,515,292 + AO356_06865 0.82 +1.0
1,515,292 + AO356_06865 0.82 +1.2
1,515,305 - AO356_06865 0.83 +0.4
1,515,527 + -1.3
1,515,569 + -0.9
1,515,570 - +2.5
1,515,570 - +0.7
1,515,648 - +0.2
1,515,648 - -0.8
1,515,648 - -3.0
1,515,803 + AO356_06870 0.18 +0.3
1,515,803 + AO356_06870 0.18 +0.3
1,515,803 + AO356_06870 0.18 +0.2
1,515,803 + AO356_06870 0.18 +1.1
1,515,803 + AO356_06870 0.18 +0.0
1,515,804 - AO356_06870 0.18 +0.8
1,515,804 - AO356_06870 0.18 -0.2
1,515,804 - AO356_06870 0.18 -0.1
1,515,899 + AO356_06870 0.24 -0.4
1,515,899 + AO356_06870 0.24 +0.1
1,515,899 + AO356_06870 0.24 +1.1
1,515,900 - AO356_06870 0.24 +0.1
1,516,145 + AO356_06870 0.39 -0.1
1,516,207 + AO356_06870 0.43 +1.0
1,516,253 + AO356_06870 0.46 +0.4
1,516,254 - AO356_06870 0.46 -1.1
1,516,254 - AO356_06870 0.46 +0.5
1,516,254 - AO356_06870 0.46 +0.4
1,516,256 + AO356_06870 0.46 -0.5
1,516,257 - AO356_06870 0.46 -0.2
1,516,439 + AO356_06870 0.57 +0.7
1,516,439 + AO356_06870 0.57 +0.8
1,516,938 - AO356_06870 0.88 +1.9
1,516,938 - AO356_06870 0.88 +0.2
1,517,152 + +0.1
1,517,152 + +0.3
1,517,152 + -1.2
1,517,153 - +0.3
1,517,153 - -0.4
1,517,153 - -0.4
1,517,154 + +0.2
1,517,154 + -0.3
1,517,154 + +0.6
1,517,154 + -0.5
1,517,155 - +1.5
1,517,155 - +0.0
1,517,155 - +0.5
1,517,158 + +0.6
1,517,158 + +0.7
1,517,158 + +0.4
1,517,158 + +0.6
1,517,159 - +0.2
1,517,159 - -0.4
1,517,159 - +0.8
1,517,159 - +0.0
1,517,160 + -0.0
1,517,161 - -0.2
1,517,239 + +0.3
1,517,239 + -0.1
1,517,239 + +0.9
1,517,240 - +0.6
1,517,240 - +0.8
1,517,347 + AO356_06875 0.12 -1.0
1,517,635 + AO356_06875 0.37 +0.7
1,517,635 + AO356_06875 0.37 -1.4
1,517,635 + AO356_06875 0.37 -0.7
1,517,635 + AO356_06875 0.37 -0.5
1,517,636 - AO356_06875 0.37 +0.4
1,517,636 - AO356_06875 0.37 +0.5
1,517,636 - AO356_06875 0.37 +1.0
1,517,731 + AO356_06875 0.45 +0.9
1,517,731 + AO356_06875 0.45 +0.9
1,517,732 - AO356_06875 0.45 +0.3
1,517,732 - AO356_06875 0.45 -0.0
1,517,999 + AO356_06875 0.68 -0.0
1,518,000 - AO356_06875 0.69 +1.2

Or see this region's nucleotide sequence