Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06865 and AO356_06870 are separated by 34 nucleotides AO356_06870 and AO356_06875 are separated by 71 nucleotides
AO356_06865: AO356_06865 - ABC transporter permease, at 1,514,442 to 1,515,479
_06865
AO356_06870: AO356_06870 - ABC transporter substrate-binding protein, at 1,515,514 to 1,517,136
_06870
AO356_06875: AO356_06875 - mandelate racemase, at 1,517,208 to 1,518,362
_06875
Position (kb)
1515
1516
1517
1518 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1514.576 kb on - strand, within AO356_06865 at 1514.642 kb on - strand, within AO356_06865 at 1514.746 kb on + strand, within AO356_06865 at 1514.746 kb on + strand, within AO356_06865 at 1514.747 kb on - strand, within AO356_06865 at 1514.797 kb on + strand, within AO356_06865 at 1514.798 kb on - strand, within AO356_06865 at 1514.933 kb on - strand, within AO356_06865 at 1514.980 kb on + strand, within AO356_06865 at 1514.980 kb on + strand, within AO356_06865 at 1514.981 kb on - strand, within AO356_06865 at 1514.981 kb on - strand, within AO356_06865 at 1514.981 kb on - strand, within AO356_06865 at 1514.981 kb on - strand, within AO356_06865 at 1515.245 kb on - strand, within AO356_06865 at 1515.292 kb on + strand, within AO356_06865 at 1515.292 kb on + strand, within AO356_06865 at 1515.292 kb on + strand, within AO356_06865 at 1515.292 kb on + strand, within AO356_06865 at 1515.305 kb on - strand, within AO356_06865 at 1515.527 kb on + strand at 1515.569 kb on + strand at 1515.570 kb on - strand at 1515.570 kb on - strand at 1515.648 kb on - strand at 1515.648 kb on - strand at 1515.648 kb on - strand at 1515.803 kb on + strand, within AO356_06870 at 1515.803 kb on + strand, within AO356_06870 at 1515.803 kb on + strand, within AO356_06870 at 1515.803 kb on + strand, within AO356_06870 at 1515.803 kb on + strand, within AO356_06870 at 1515.804 kb on - strand, within AO356_06870 at 1515.804 kb on - strand, within AO356_06870 at 1515.804 kb on - strand, within AO356_06870 at 1515.899 kb on + strand, within AO356_06870 at 1515.899 kb on + strand, within AO356_06870 at 1515.899 kb on + strand, within AO356_06870 at 1515.900 kb on - strand, within AO356_06870 at 1516.145 kb on + strand, within AO356_06870 at 1516.207 kb on + strand, within AO356_06870 at 1516.253 kb on + strand, within AO356_06870 at 1516.254 kb on - strand, within AO356_06870 at 1516.254 kb on - strand, within AO356_06870 at 1516.254 kb on - strand, within AO356_06870 at 1516.256 kb on + strand, within AO356_06870 at 1516.257 kb on - strand, within AO356_06870 at 1516.439 kb on + strand, within AO356_06870 at 1516.439 kb on + strand, within AO356_06870 at 1516.938 kb on - strand, within AO356_06870 at 1516.938 kb on - strand, within AO356_06870 at 1517.152 kb on + strand at 1517.152 kb on + strand at 1517.152 kb on + strand at 1517.153 kb on - strand at 1517.153 kb on - strand at 1517.153 kb on - strand at 1517.154 kb on + strand at 1517.154 kb on + strand at 1517.154 kb on + strand at 1517.154 kb on + strand at 1517.155 kb on - strand at 1517.155 kb on - strand at 1517.155 kb on - strand at 1517.158 kb on + strand at 1517.158 kb on + strand at 1517.158 kb on + strand at 1517.158 kb on + strand at 1517.159 kb on - strand at 1517.159 kb on - strand at 1517.159 kb on - strand at 1517.159 kb on - strand at 1517.160 kb on + strand at 1517.161 kb on - strand at 1517.239 kb on + strand at 1517.239 kb on + strand at 1517.239 kb on + strand at 1517.240 kb on - strand at 1517.240 kb on - strand at 1517.347 kb on + strand, within AO356_06875 at 1517.635 kb on + strand, within AO356_06875 at 1517.635 kb on + strand, within AO356_06875 at 1517.635 kb on + strand, within AO356_06875 at 1517.635 kb on + strand, within AO356_06875 at 1517.636 kb on - strand, within AO356_06875 at 1517.636 kb on - strand, within AO356_06875 at 1517.636 kb on - strand, within AO356_06875 at 1517.731 kb on + strand, within AO356_06875 at 1517.731 kb on + strand, within AO356_06875 at 1517.732 kb on - strand, within AO356_06875 at 1517.732 kb on - strand, within AO356_06875 at 1517.999 kb on + strand, within AO356_06875 at 1518.000 kb on - strand, within AO356_06875
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,514,576 - AO356_06865 0.13 -0.2 1,514,642 - AO356_06865 0.19 +0.4 1,514,746 + AO356_06865 0.29 +0.7 1,514,746 + AO356_06865 0.29 +0.1 1,514,747 - AO356_06865 0.29 +0.2 1,514,797 + AO356_06865 0.34 +0.0 1,514,798 - AO356_06865 0.34 +0.6 1,514,933 - AO356_06865 0.47 +0.8 1,514,980 + AO356_06865 0.52 -0.7 1,514,980 + AO356_06865 0.52 -0.4 1,514,981 - AO356_06865 0.52 +0.4 1,514,981 - AO356_06865 0.52 -0.2 1,514,981 - AO356_06865 0.52 +0.3 1,514,981 - AO356_06865 0.52 -0.2 1,515,245 - AO356_06865 0.77 +0.1 1,515,292 + AO356_06865 0.82 -0.3 1,515,292 + AO356_06865 0.82 +0.4 1,515,292 + AO356_06865 0.82 +1.0 1,515,292 + AO356_06865 0.82 +1.2 1,515,305 - AO356_06865 0.83 +0.4 1,515,527 + -1.3 1,515,569 + -0.9 1,515,570 - +2.5 1,515,570 - +0.7 1,515,648 - +0.2 1,515,648 - -0.8 1,515,648 - -3.0 1,515,803 + AO356_06870 0.18 +0.3 1,515,803 + AO356_06870 0.18 +0.3 1,515,803 + AO356_06870 0.18 +0.2 1,515,803 + AO356_06870 0.18 +1.1 1,515,803 + AO356_06870 0.18 +0.0 1,515,804 - AO356_06870 0.18 +0.8 1,515,804 - AO356_06870 0.18 -0.2 1,515,804 - AO356_06870 0.18 -0.1 1,515,899 + AO356_06870 0.24 -0.4 1,515,899 + AO356_06870 0.24 +0.1 1,515,899 + AO356_06870 0.24 +1.1 1,515,900 - AO356_06870 0.24 +0.1 1,516,145 + AO356_06870 0.39 -0.1 1,516,207 + AO356_06870 0.43 +1.0 1,516,253 + AO356_06870 0.46 +0.4 1,516,254 - AO356_06870 0.46 -1.1 1,516,254 - AO356_06870 0.46 +0.5 1,516,254 - AO356_06870 0.46 +0.4 1,516,256 + AO356_06870 0.46 -0.5 1,516,257 - AO356_06870 0.46 -0.2 1,516,439 + AO356_06870 0.57 +0.7 1,516,439 + AO356_06870 0.57 +0.8 1,516,938 - AO356_06870 0.88 +1.9 1,516,938 - AO356_06870 0.88 +0.2 1,517,152 + +0.1 1,517,152 + +0.3 1,517,152 + -1.2 1,517,153 - +0.3 1,517,153 - -0.4 1,517,153 - -0.4 1,517,154 + +0.2 1,517,154 + -0.3 1,517,154 + +0.6 1,517,154 + -0.5 1,517,155 - +1.5 1,517,155 - +0.0 1,517,155 - +0.5 1,517,158 + +0.6 1,517,158 + +0.7 1,517,158 + +0.4 1,517,158 + +0.6 1,517,159 - +0.2 1,517,159 - -0.4 1,517,159 - +0.8 1,517,159 - +0.0 1,517,160 + -0.0 1,517,161 - -0.2 1,517,239 + +0.3 1,517,239 + -0.1 1,517,239 + +0.9 1,517,240 - +0.6 1,517,240 - +0.8 1,517,347 + AO356_06875 0.12 -1.0 1,517,635 + AO356_06875 0.37 +0.7 1,517,635 + AO356_06875 0.37 -1.4 1,517,635 + AO356_06875 0.37 -0.7 1,517,635 + AO356_06875 0.37 -0.5 1,517,636 - AO356_06875 0.37 +0.4 1,517,636 - AO356_06875 0.37 +0.5 1,517,636 - AO356_06875 0.37 +1.0 1,517,731 + AO356_06875 0.45 +0.9 1,517,731 + AO356_06875 0.45 +0.9 1,517,732 - AO356_06875 0.45 +0.3 1,517,732 - AO356_06875 0.45 -0.0 1,517,999 + AO356_06875 0.68 -0.0 1,518,000 - AO356_06875 0.69 +1.2
Or see this region's nucleotide sequence