Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06860

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06850 and AO356_06855 are separated by 10 nucleotidesAO356_06855 and AO356_06860 are separated by 10 nucleotidesAO356_06860 and AO356_06865 overlap by 1 nucleotides AO356_06850: AO356_06850 - peptide ABC transporter ATP-binding protein, at 1,511,906 to 1,512,673 _06850 AO356_06855: AO356_06855 - peptide ABC transporter ATP-binding protein, at 1,512,684 to 1,513,523 _06855 AO356_06860: AO356_06860 - D-ala-D-ala transporter subunit, at 1,513,534 to 1,514,442 _06860 AO356_06865: AO356_06865 - ABC transporter permease, at 1,514,442 to 1,515,479 _06865 Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -1 0 1at 1512.778 kb on + strand, within AO356_06855at 1512.779 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1513.081 kb on + strand, within AO356_06855at 1513.174 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.359 kb on + strand, within AO356_06855at 1513.359 kb on + strand, within AO356_06855at 1513.360 kb on - strand, within AO356_06855at 1513.512 kb on + strandat 1513.513 kb on - strandat 1513.655 kb on + strand, within AO356_06860at 1513.655 kb on + strand, within AO356_06860at 1513.655 kb on + strand, within AO356_06860at 1514.129 kb on + strand, within AO356_06860at 1514.129 kb on + strand, within AO356_06860at 1514.129 kb on + strand, within AO356_06860at 1514.129 kb on + strand, within AO356_06860at 1514.129 kb on + strand, within AO356_06860at 1514.130 kb on - strand, within AO356_06860at 1514.150 kb on + strand, within AO356_06860at 1514.150 kb on + strand, within AO356_06860at 1514.151 kb on - strand, within AO356_06860at 1514.151 kb on - strand, within AO356_06860at 1514.180 kb on + strand, within AO356_06860at 1514.180 kb on + strand, within AO356_06860at 1514.471 kb on - strandat 1514.471 kb on - strandat 1514.471 kb on - strandat 1514.576 kb on - strand, within AO356_06865at 1514.642 kb on - strand, within AO356_06865at 1514.746 kb on + strand, within AO356_06865at 1514.746 kb on + strand, within AO356_06865at 1514.747 kb on - strand, within AO356_06865at 1514.797 kb on + strand, within AO356_06865at 1514.798 kb on - strand, within AO356_06865at 1514.933 kb on - strand, within AO356_06865at 1514.980 kb on + strand, within AO356_06865at 1514.980 kb on + strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1514.981 kb on - strand, within AO356_06865at 1515.245 kb on - strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.292 kb on + strand, within AO356_06865at 1515.305 kb on - strand, within AO356_06865

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,512,778 + AO356_06855 0.11 +0.2
1,512,779 - AO356_06855 0.11 +0.1
1,512,839 - AO356_06855 0.18 -0.5
1,512,839 - AO356_06855 0.18 +0.4
1,512,839 - AO356_06855 0.18 -0.1
1,513,081 + AO356_06855 0.47 -0.8
1,513,174 + AO356_06855 0.58 +0.2
1,513,222 + AO356_06855 0.64 +0.5
1,513,222 + AO356_06855 0.64 -0.2
1,513,222 + AO356_06855 0.64 -0.2
1,513,359 + AO356_06855 0.80 -0.6
1,513,359 + AO356_06855 0.80 -0.6
1,513,360 - AO356_06855 0.80 -0.6
1,513,512 + +0.6
1,513,513 - -0.6
1,513,655 + AO356_06860 0.13 +0.3
1,513,655 + AO356_06860 0.13 +0.1
1,513,655 + AO356_06860 0.13 +0.4
1,514,129 + AO356_06860 0.65 +1.4
1,514,129 + AO356_06860 0.65 -0.1
1,514,129 + AO356_06860 0.65 -0.1
1,514,129 + AO356_06860 0.65 +0.4
1,514,129 + AO356_06860 0.65 +0.2
1,514,130 - AO356_06860 0.66 +0.3
1,514,150 + AO356_06860 0.68 +0.1
1,514,150 + AO356_06860 0.68 -1.0
1,514,151 - AO356_06860 0.68 +0.1
1,514,151 - AO356_06860 0.68 +0.6
1,514,180 + AO356_06860 0.71 -0.5
1,514,180 + AO356_06860 0.71 +0.1
1,514,471 - +1.2
1,514,471 - -0.2
1,514,471 - +0.4
1,514,576 - AO356_06865 0.13 -0.2
1,514,642 - AO356_06865 0.19 +0.4
1,514,746 + AO356_06865 0.29 +0.7
1,514,746 + AO356_06865 0.29 +0.1
1,514,747 - AO356_06865 0.29 +0.2
1,514,797 + AO356_06865 0.34 +0.0
1,514,798 - AO356_06865 0.34 +0.6
1,514,933 - AO356_06865 0.47 +0.8
1,514,980 + AO356_06865 0.52 -0.7
1,514,980 + AO356_06865 0.52 -0.4
1,514,981 - AO356_06865 0.52 +0.4
1,514,981 - AO356_06865 0.52 -0.2
1,514,981 - AO356_06865 0.52 +0.3
1,514,981 - AO356_06865 0.52 -0.2
1,515,245 - AO356_06865 0.77 +0.1
1,515,292 + AO356_06865 0.82 -0.3
1,515,292 + AO356_06865 0.82 +0.4
1,515,292 + AO356_06865 0.82 +1.0
1,515,292 + AO356_06865 0.82 +1.2
1,515,305 - AO356_06865 0.83 +0.4

Or see this region's nucleotide sequence