Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06845 and AO356_06850 are separated by 131 nucleotides AO356_06850 and AO356_06855 are separated by 10 nucleotides AO356_06855 and AO356_06860 are separated by 10 nucleotides AO356_06860 and AO356_06865 overlap by 1 nucleotides
AO356_06845: AO356_06845 - porin, at 1,511,052 to 1,511,774
_06845
AO356_06850: AO356_06850 - peptide ABC transporter ATP-binding protein, at 1,511,906 to 1,512,673
_06850
AO356_06855: AO356_06855 - peptide ABC transporter ATP-binding protein, at 1,512,684 to 1,513,523
_06855
AO356_06860: AO356_06860 - D-ala-D-ala transporter subunit, at 1,513,534 to 1,514,442
_06860
AO356_06865: AO356_06865 - ABC transporter permease, at 1,514,442 to 1,515,479
_06865
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1511.691 kb on + strand, within AO356_06845 at 1511.691 kb on + strand, within AO356_06845 at 1511.692 kb on - strand, within AO356_06845 at 1511.692 kb on - strand, within AO356_06845 at 1511.692 kb on - strand, within AO356_06845 at 1511.692 kb on - strand, within AO356_06845 at 1511.699 kb on + strand, within AO356_06845 at 1511.700 kb on - strand, within AO356_06845 at 1511.700 kb on - strand, within AO356_06845 at 1511.701 kb on + strand, within AO356_06845 at 1511.702 kb on - strand at 1511.702 kb on - strand at 1511.782 kb on + strand at 1511.791 kb on + strand at 1511.791 kb on + strand at 1511.792 kb on - strand at 1511.792 kb on - strand at 1511.792 kb on - strand at 1511.800 kb on + strand at 1511.801 kb on - strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.803 kb on + strand at 1511.804 kb on - strand at 1511.804 kb on - strand at 1511.804 kb on - strand at 1511.917 kb on + strand at 1511.918 kb on - strand at 1511.918 kb on - strand at 1511.921 kb on + strand at 1511.922 kb on - strand at 1511.930 kb on + strand at 1511.930 kb on + strand at 1511.930 kb on + strand at 1511.931 kb on - strand at 1511.931 kb on - strand at 1511.931 kb on - strand at 1511.931 kb on - strand at 1511.931 kb on - strand at 1511.964 kb on + strand at 1511.965 kb on - strand at 1511.965 kb on - strand at 1512.093 kb on + strand, within AO356_06850 at 1512.093 kb on + strand, within AO356_06850 at 1512.402 kb on + strand, within AO356_06850 at 1512.402 kb on + strand, within AO356_06850 at 1512.402 kb on + strand, within AO356_06850 at 1512.505 kb on - strand, within AO356_06850 at 1512.505 kb on - strand, within AO356_06850 at 1512.778 kb on + strand, within AO356_06855 at 1512.779 kb on - strand, within AO356_06855 at 1512.839 kb on - strand, within AO356_06855 at 1512.839 kb on - strand, within AO356_06855 at 1512.839 kb on - strand, within AO356_06855 at 1513.081 kb on + strand, within AO356_06855 at 1513.174 kb on + strand, within AO356_06855 at 1513.222 kb on + strand, within AO356_06855 at 1513.222 kb on + strand, within AO356_06855 at 1513.222 kb on + strand, within AO356_06855 at 1513.359 kb on + strand, within AO356_06855 at 1513.359 kb on + strand, within AO356_06855 at 1513.360 kb on - strand, within AO356_06855 at 1513.512 kb on + strand at 1513.513 kb on - strand at 1513.655 kb on + strand, within AO356_06860 at 1513.655 kb on + strand, within AO356_06860 at 1513.655 kb on + strand, within AO356_06860 at 1514.129 kb on + strand, within AO356_06860 at 1514.129 kb on + strand, within AO356_06860 at 1514.129 kb on + strand, within AO356_06860 at 1514.129 kb on + strand, within AO356_06860 at 1514.129 kb on + strand, within AO356_06860 at 1514.130 kb on - strand, within AO356_06860 at 1514.150 kb on + strand, within AO356_06860 at 1514.150 kb on + strand, within AO356_06860 at 1514.151 kb on - strand, within AO356_06860 at 1514.151 kb on - strand, within AO356_06860 at 1514.180 kb on + strand, within AO356_06860 at 1514.180 kb on + strand, within AO356_06860 at 1514.471 kb on - strand at 1514.471 kb on - strand at 1514.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,511,691 + AO356_06845 0.88 -0.7 1,511,691 + AO356_06845 0.88 +0.0 1,511,692 - AO356_06845 0.89 +1.8 1,511,692 - AO356_06845 0.89 +0.1 1,511,692 - AO356_06845 0.89 -0.1 1,511,692 - AO356_06845 0.89 +0.1 1,511,699 + AO356_06845 0.89 +1.9 1,511,700 - AO356_06845 0.90 -0.0 1,511,700 - AO356_06845 0.90 -2.4 1,511,701 + AO356_06845 0.90 +0.1 1,511,702 - -0.2 1,511,702 - +0.4 1,511,782 + -1.2 1,511,791 + +0.7 1,511,791 + +1.3 1,511,792 - +0.1 1,511,792 - -1.0 1,511,792 - -0.1 1,511,800 + +0.1 1,511,801 - +1.1 1,511,803 + +0.7 1,511,803 + -1.0 1,511,803 + +1.2 1,511,803 + -0.0 1,511,803 + -0.3 1,511,803 + -0.2 1,511,803 + +0.0 1,511,804 - -0.2 1,511,804 - +0.1 1,511,804 - +0.3 1,511,917 + -0.2 1,511,918 - -1.0 1,511,918 - +0.0 1,511,921 + -1.7 1,511,922 - -0.1 1,511,930 + +0.4 1,511,930 + +0.4 1,511,930 + -0.4 1,511,931 - -0.1 1,511,931 - -1.0 1,511,931 - +0.2 1,511,931 - +0.2 1,511,931 - -0.4 1,511,964 + -0.3 1,511,965 - -1.7 1,511,965 - -0.6 1,512,093 + AO356_06850 0.24 +0.5 1,512,093 + AO356_06850 0.24 -0.1 1,512,402 + AO356_06850 0.65 -0.4 1,512,402 + AO356_06850 0.65 +0.6 1,512,402 + AO356_06850 0.65 -0.2 1,512,505 - AO356_06850 0.78 -0.1 1,512,505 - AO356_06850 0.78 -0.6 1,512,778 + AO356_06855 0.11 +0.2 1,512,779 - AO356_06855 0.11 +0.1 1,512,839 - AO356_06855 0.18 -0.5 1,512,839 - AO356_06855 0.18 +0.4 1,512,839 - AO356_06855 0.18 -0.1 1,513,081 + AO356_06855 0.47 -0.8 1,513,174 + AO356_06855 0.58 +0.2 1,513,222 + AO356_06855 0.64 +0.5 1,513,222 + AO356_06855 0.64 -0.2 1,513,222 + AO356_06855 0.64 -0.2 1,513,359 + AO356_06855 0.80 -0.6 1,513,359 + AO356_06855 0.80 -0.6 1,513,360 - AO356_06855 0.80 -0.6 1,513,512 + +0.6 1,513,513 - -0.6 1,513,655 + AO356_06860 0.13 +0.3 1,513,655 + AO356_06860 0.13 +0.1 1,513,655 + AO356_06860 0.13 +0.4 1,514,129 + AO356_06860 0.65 +1.4 1,514,129 + AO356_06860 0.65 -0.1 1,514,129 + AO356_06860 0.65 -0.1 1,514,129 + AO356_06860 0.65 +0.4 1,514,129 + AO356_06860 0.65 +0.2 1,514,130 - AO356_06860 0.66 +0.3 1,514,150 + AO356_06860 0.68 +0.1 1,514,150 + AO356_06860 0.68 -1.0 1,514,151 - AO356_06860 0.68 +0.1 1,514,151 - AO356_06860 0.68 +0.6 1,514,180 + AO356_06860 0.71 -0.5 1,514,180 + AO356_06860 0.71 +0.1 1,514,471 - +1.2 1,514,471 - -0.2 1,514,471 - +0.4
Or see this region's nucleotide sequence