Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04105 and AO356_04110 are separated by 223 nucleotides AO356_04110 and AO356_04115 are separated by 476 nucleotides
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
AO356_04115: AO356_04115 - LysR family transcriptional regulator, at 926,144 to 927,037
_04115
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.385 kb on - strand, within AO356_04105 at 923.402 kb on + strand, within AO356_04105 at 923.403 kb on - strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.942 kb on + strand at 923.942 kb on + strand at 923.943 kb on - strand at 923.943 kb on - strand at 923.982 kb on + strand at 923.982 kb on + strand at 923.983 kb on - strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.985 kb on - strand at 924.028 kb on + strand at 924.249 kb on + strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.293 kb on - strand at 924.309 kb on + strand at 924.309 kb on + strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.340 kb on - strand at 924.372 kb on + strand at 924.372 kb on + strand at 924.373 kb on - strand at 924.373 kb on - strand at 924.408 kb on + strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.474 kb on + strand, within AO356_04110 at 924.480 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.766 kb on - strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.916 kb on - strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.970 kb on - strand, within AO356_04110 at 925.068 kb on + strand, within AO356_04110 at 925.081 kb on - strand, within AO356_04110 at 925.425 kb on + strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.474 kb on - strand, within AO356_04110 at 925.582 kb on - strand at 925.582 kb on - strand at 925.582 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.585 kb on - strand at 925.726 kb on + strand at 925.727 kb on - strand at 925.727 kb on - strand at 925.753 kb on + strand at 925.753 kb on + strand at 925.873 kb on + strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.878 kb on - strand at 926.062 kb on + strand at 926.063 kb on - strand at 926.063 kb on - strand at 926.065 kb on + strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.078 kb on + strand at 926.078 kb on + strand at 926.079 kb on - strand at 926.112 kb on + strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.386 kb on - strand, within AO356_04115 at 926.445 kb on - strand, within AO356_04115
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 923,384 + AO356_04105 0.55 +0.3 923,384 + AO356_04105 0.55 +0.3 923,384 + AO356_04105 0.55 -0.4 923,385 - AO356_04105 0.56 -0.4 923,402 + AO356_04105 0.57 +0.2 923,403 - AO356_04105 0.57 -0.2 923,501 + AO356_04105 0.63 -0.3 923,501 + AO356_04105 0.63 +0.1 923,502 - AO356_04105 0.63 -1.5 923,502 - AO356_04105 0.63 -0.8 923,720 + AO356_04105 0.78 -0.1 923,720 + AO356_04105 0.78 -0.3 923,721 - AO356_04105 0.78 -0.2 923,721 - AO356_04105 0.78 -0.2 923,721 - AO356_04105 0.78 +0.5 923,942 + +0.3 923,942 + -0.4 923,943 - -2.4 923,943 - +0.5 923,982 + -0.4 923,982 + +0.8 923,983 - -1.9 923,984 + +0.5 923,984 + -0.1 923,984 + -0.9 923,985 - +0.4 924,028 + +0.2 924,249 + +0.5 924,250 - +0.3 924,250 - +0.1 924,250 - +0.6 924,292 + +0.2 924,292 + +0.1 924,292 + -0.2 924,292 + -1.2 924,293 - +0.3 924,309 + +1.2 924,309 + +0.8 924,310 - -0.5 924,310 - +0.3 924,310 - +0.0 924,340 - +0.7 924,372 + +0.2 924,372 + -1.8 924,373 - +0.9 924,373 - -0.5 924,408 + +0.2 924,409 - -1.1 924,409 - -0.3 924,409 - +1.4 924,409 - -0.5 924,412 + -0.8 924,412 + +0.2 924,412 + -1.1 924,412 + +0.4 924,413 - +1.2 924,413 - -0.6 924,413 - +0.6 924,474 + AO356_04110 0.14 -0.1 924,480 + AO356_04110 0.14 +1.0 924,576 + AO356_04110 0.21 +0.5 924,576 + AO356_04110 0.21 -0.4 924,577 - AO356_04110 0.21 +2.3 924,577 - AO356_04110 0.21 -0.2 924,607 - AO356_04110 0.24 +0.3 924,607 - AO356_04110 0.24 +0.7 924,651 + AO356_04110 0.27 -0.4 924,651 + AO356_04110 0.27 -0.1 924,651 + AO356_04110 0.27 -0.0 924,651 + AO356_04110 0.27 +0.2 924,651 + AO356_04110 0.27 +0.5 924,652 - AO356_04110 0.27 -0.5 924,652 - AO356_04110 0.27 -0.7 924,652 - AO356_04110 0.27 -0.5 924,652 - AO356_04110 0.27 +1.1 924,765 + AO356_04110 0.35 +1.4 924,765 + AO356_04110 0.35 +0.2 924,765 + AO356_04110 0.35 -0.3 924,765 + AO356_04110 0.35 +0.1 924,765 + AO356_04110 0.35 +1.4 924,766 - AO356_04110 0.35 -0.4 924,915 + AO356_04110 0.46 +0.3 924,915 + AO356_04110 0.46 +0.4 924,916 - AO356_04110 0.46 +0.2 924,957 + AO356_04110 0.49 +0.9 924,957 + AO356_04110 0.49 +0.2 924,958 - AO356_04110 0.49 +0.7 924,958 - AO356_04110 0.49 +0.6 924,969 + AO356_04110 0.50 -0.2 924,969 + AO356_04110 0.50 +0.9 924,970 - AO356_04110 0.50 +1.5 925,068 + AO356_04110 0.57 -0.1 925,081 - AO356_04110 0.58 -0.2 925,425 + AO356_04110 0.83 +0.9 925,426 - AO356_04110 0.83 -0.4 925,426 - AO356_04110 0.83 -0.6 925,474 - AO356_04110 0.86 -0.6 925,582 - -0.1 925,582 - +0.1 925,582 - -0.1 925,584 + +0.7 925,584 + +0.1 925,584 + +1.3 925,585 - +0.1 925,726 + -0.7 925,727 - -0.5 925,727 - -0.1 925,753 + +0.1 925,753 + +0.9 925,873 + -1.5 925,874 - +0.2 925,874 - +0.7 925,874 - +1.2 925,874 - -1.0 925,874 - +0.3 925,874 - +0.4 925,874 - +1.1 925,874 - +0.3 925,874 - -0.2 925,874 - +1.1 925,874 - -0.9 925,874 - +0.7 925,874 - +0.3 925,874 - +0.1 925,874 - +0.7 925,878 - +0.2 926,062 + -0.4 926,063 - +0.6 926,063 - -1.2 926,065 + +0.0 926,065 + -0.4 926,066 - +0.4 926,078 + +0.8 926,078 + +0.7 926,079 - +0.0 926,112 + +0.2 926,113 - +1.3 926,113 - +0.0 926,386 - AO356_04115 0.27 -0.4 926,445 - AO356_04115 0.34 -0.5
Or see this region's nucleotide sequence