Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04090 and AO356_04095 are separated by 310 nucleotides AO356_04095 and AO356_04100 are separated by 9 nucleotides AO356_04100 and AO356_04105 are separated by 52 nucleotides
AO356_04090: AO356_04090 - LysR family transcriptional regulator, at 919,923 to 920,816
_04090
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.311 kb on + strand, within AO356_04090 at 920.311 kb on + strand, within AO356_04090 at 920.323 kb on + strand, within AO356_04090 at 920.323 kb on + strand, within AO356_04090 at 920.324 kb on - strand, within AO356_04090 at 920.324 kb on - strand, within AO356_04090 at 920.405 kb on - strand, within AO356_04090 at 920.455 kb on + strand, within AO356_04090 at 920.529 kb on - strand, within AO356_04090 at 920.561 kb on - strand, within AO356_04090 at 920.561 kb on - strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.830 kb on + strand at 920.831 kb on - strand at 920.831 kb on - strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.976 kb on + strand at 920.976 kb on + strand at 920.977 kb on - strand at 921.040 kb on + strand at 921.040 kb on + strand at 921.045 kb on - strand at 921.099 kb on + strand at 921.099 kb on + strand at 921.103 kb on + strand at 921.103 kb on + strand at 921.122 kb on + strand at 921.122 kb on + strand at 921.123 kb on - strand at 921.337 kb on + strand, within AO356_04095 at 921.451 kb on + strand, within AO356_04095 at 921.452 kb on - strand, within AO356_04095 at 921.537 kb on + strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.550 kb on - strand, within AO356_04095 at 921.703 kb on + strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.832 kb on + strand, within AO356_04095 at 921.833 kb on - strand, within AO356_04095 at 921.975 kb on - strand, within AO356_04095 at 922.036 kb on + strand at 922.037 kb on - strand at 922.037 kb on - strand at 922.053 kb on - strand at 922.162 kb on + strand, within AO356_04100 at 922.162 kb on + strand, within AO356_04100 at 922.163 kb on - strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.202 kb on - strand, within AO356_04100 at 922.237 kb on + strand, within AO356_04100 at 922.492 kb on + strand at 922.492 kb on + strand at 922.552 kb on + strand at 922.552 kb on + strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.558 kb on + strand at 922.558 kb on + strand at 922.564 kb on + strand at 922.564 kb on + strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.670 kb on - strand at 922.670 kb on - strand at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.037 kb on - strand, within AO356_04105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 920,290 + AO356_04090 0.41 +1.3 920,290 + AO356_04090 0.41 -0.0 920,290 + AO356_04090 0.41 -0.2 920,290 + AO356_04090 0.41 -0.1 920,291 - AO356_04090 0.41 +0.4 920,291 - AO356_04090 0.41 +0.6 920,291 - AO356_04090 0.41 -0.3 920,311 + AO356_04090 0.43 +1.7 920,311 + AO356_04090 0.43 +0.3 920,323 + AO356_04090 0.45 +0.5 920,323 + AO356_04090 0.45 +1.1 920,324 - AO356_04090 0.45 +0.7 920,324 - AO356_04090 0.45 -1.4 920,405 - AO356_04090 0.54 +0.2 920,455 + AO356_04090 0.60 +0.3 920,529 - AO356_04090 0.68 -0.5 920,561 - AO356_04090 0.71 -0.3 920,561 - AO356_04090 0.71 -0.2 920,698 + AO356_04090 0.87 -0.1 920,698 + AO356_04090 0.87 +0.7 920,698 + AO356_04090 0.87 +0.1 920,698 + AO356_04090 0.87 -0.9 920,698 + AO356_04090 0.87 +0.1 920,698 + AO356_04090 0.87 -0.2 920,698 + AO356_04090 0.87 -0.6 920,698 + AO356_04090 0.87 +0.8 920,698 + AO356_04090 0.87 -0.3 920,698 + AO356_04090 0.87 -1.0 920,699 - AO356_04090 0.87 -0.0 920,699 - AO356_04090 0.87 -0.2 920,699 - AO356_04090 0.87 +1.1 920,699 - AO356_04090 0.87 -0.8 920,699 - AO356_04090 0.87 +1.0 920,830 + +1.4 920,831 - +0.1 920,831 - -0.3 920,867 + -0.1 920,867 + +0.8 920,867 + +0.7 920,867 + +0.9 920,867 + +0.2 920,867 + -0.8 920,867 + -0.4 920,868 - +0.4 920,868 - +0.6 920,868 - -1.8 920,868 - +0.1 920,868 - -0.2 920,976 + -0.4 920,976 + -1.5 920,977 - +1.0 921,040 + -0.3 921,040 + -0.2 921,045 - -0.8 921,099 + -0.1 921,099 + +0.5 921,103 + -0.2 921,103 + +0.4 921,122 + -0.5 921,122 + +0.4 921,123 - +0.3 921,337 + AO356_04095 0.22 -0.1 921,451 + AO356_04095 0.34 -1.7 921,452 - AO356_04095 0.34 -0.3 921,537 + AO356_04095 0.43 -0.7 921,538 - AO356_04095 0.43 +0.5 921,538 - AO356_04095 0.43 -0.3 921,538 - AO356_04095 0.43 -0.7 921,550 - AO356_04095 0.44 -0.5 921,703 + AO356_04095 0.61 +0.4 921,704 - AO356_04095 0.61 +0.2 921,704 - AO356_04095 0.61 -1.1 921,832 + AO356_04095 0.74 -0.6 921,833 - AO356_04095 0.74 +0.4 921,975 - AO356_04095 0.89 +0.3 922,036 + +0.1 922,037 - -1.6 922,037 - -0.3 922,053 - -0.8 922,162 + AO356_04100 0.18 -1.0 922,162 + AO356_04100 0.18 +0.0 922,163 - AO356_04100 0.19 -0.1 922,201 + AO356_04100 0.28 -0.1 922,201 + AO356_04100 0.28 -0.5 922,202 - AO356_04100 0.28 -0.1 922,237 + AO356_04100 0.37 -0.9 922,492 + +1.2 922,492 + -0.4 922,552 + -0.2 922,552 + -0.8 922,553 - +0.2 922,553 - +0.1 922,553 - +0.2 922,553 - -0.4 922,553 - +0.9 922,553 - +0.6 922,553 - +0.1 922,553 - -0.0 922,558 + +1.9 922,558 + +0.6 922,564 + +1.7 922,564 + +0.6 922,565 - +0.1 922,565 - -0.3 922,565 - +0.6 922,565 - +0.1 922,565 - +0.3 922,565 - -0.2 922,565 - -1.3 922,669 + +1.0 922,669 + -1.5 922,669 + -0.7 922,670 - +0.3 922,670 - +0.2 923,036 + AO356_04105 0.32 -0.9 923,036 + AO356_04105 0.32 -0.0 923,036 + AO356_04105 0.32 -1.7 923,037 - AO356_04105 0.32 -0.0
Or see this region's nucleotide sequence