Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03280 and AO356_03285 are separated by 105 nucleotides AO356_03285 and AO356_03290 are separated by 207 nucleotides AO356_03290 and AO356_03295 are separated by 117 nucleotides AO356_03295 and AO356_03300 are separated by 64 nucleotides
AO356_03280: AO356_03280 - metal-chelation protein CHAD, at 727,141 to 727,902
_03280
AO356_03285: AO356_03285 - hypothetical protein, at 728,008 to 728,298
_03285
AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543
_03290
AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359
_03295
AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075
_03300
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1 at 727.615 kb on + strand, within AO356_03280 at 727.615 kb on + strand, within AO356_03280 at 727.615 kb on + strand, within AO356_03280 at 727.616 kb on - strand, within AO356_03280 at 727.616 kb on - strand, within AO356_03280 at 727.616 kb on - strand, within AO356_03280 at 727.661 kb on + strand, within AO356_03280 at 727.661 kb on + strand, within AO356_03280 at 727.661 kb on + strand, within AO356_03280 at 727.661 kb on + strand, within AO356_03280 at 727.662 kb on - strand, within AO356_03280 at 727.662 kb on - strand, within AO356_03280 at 727.662 kb on - strand, within AO356_03280 at 727.908 kb on + strand at 727.908 kb on + strand at 727.908 kb on + strand at 727.908 kb on + strand at 727.908 kb on + strand at 727.908 kb on + strand at 727.909 kb on - strand at 727.909 kb on - strand at 727.909 kb on - strand at 727.909 kb on - strand at 727.909 kb on - strand at 727.909 kb on - strand at 727.915 kb on + strand at 727.916 kb on - strand at 727.944 kb on + strand at 727.945 kb on - strand at 727.945 kb on - strand at 727.978 kb on + strand at 727.978 kb on + strand at 727.978 kb on + strand at 727.979 kb on - strand at 727.979 kb on - strand at 728.036 kb on + strand at 728.036 kb on + strand at 728.036 kb on + strand at 728.132 kb on + strand, within AO356_03285 at 728.212 kb on - strand, within AO356_03285 at 728.302 kb on + strand at 728.335 kb on + strand at 728.335 kb on + strand at 728.335 kb on + strand at 728.335 kb on + strand at 728.398 kb on + strand at 728.398 kb on + strand at 728.528 kb on + strand at 728.529 kb on - strand at 728.554 kb on + strand at 728.562 kb on + strand at 728.596 kb on + strand at 728.650 kb on + strand, within AO356_03290 at 728.651 kb on - strand, within AO356_03290 at 728.651 kb on - strand, within AO356_03290 at 728.651 kb on - strand, within AO356_03290 at 728.701 kb on + strand, within AO356_03290 at 728.701 kb on + strand, within AO356_03290 at 728.701 kb on + strand, within AO356_03290 at 728.701 kb on + strand, within AO356_03290 at 728.702 kb on - strand, within AO356_03290 at 728.824 kb on + strand, within AO356_03290 at 728.824 kb on + strand, within AO356_03290 at 728.824 kb on + strand, within AO356_03290 at 729.391 kb on + strand, within AO356_03290 at 729.391 kb on + strand, within AO356_03290 at 729.463 kb on + strand at 729.464 kb on - strand at 729.464 kb on - strand at 729.524 kb on - strand at 729.541 kb on + strand at 729.541 kb on + strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.779 kb on + strand, within AO356_03295 at 729.779 kb on + strand, within AO356_03295 at 729.780 kb on - strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.882 kb on - strand, within AO356_03295 at 730.059 kb on - strand, within AO356_03295 at 730.274 kb on + strand, within AO356_03295 at 730.274 kb on + strand, within AO356_03295 at 730.275 kb on - strand, within AO356_03295 at 730.410 kb on + strand at 730.410 kb on + strand at 730.410 kb on + strand at 730.410 kb on + strand at 730.411 kb on - strand at 730.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 727,615 + AO356_03280 0.62 +0.1 727,615 + AO356_03280 0.62 -0.3 727,615 + AO356_03280 0.62 -1.6 727,616 - AO356_03280 0.62 -0.6 727,616 - AO356_03280 0.62 +0.8 727,616 - AO356_03280 0.62 -1.3 727,661 + AO356_03280 0.68 -1.7 727,661 + AO356_03280 0.68 +1.5 727,661 + AO356_03280 0.68 +0.2 727,661 + AO356_03280 0.68 -0.9 727,662 - AO356_03280 0.68 +0.3 727,662 - AO356_03280 0.68 +0.2 727,662 - AO356_03280 0.68 +0.5 727,908 + -0.2 727,908 + +0.4 727,908 + +0.6 727,908 + -0.3 727,908 + +0.4 727,908 + -0.7 727,909 - +1.7 727,909 - -0.3 727,909 - -0.7 727,909 - -0.8 727,909 - -0.5 727,909 - +0.0 727,915 + -1.6 727,916 - +0.8 727,944 + -0.2 727,945 - -0.4 727,945 - +0.1 727,978 + +1.0 727,978 + +0.5 727,978 + -1.7 727,979 - +0.1 727,979 - +0.7 728,036 + +0.8 728,036 + -0.7 728,036 + +1.1 728,132 + AO356_03285 0.43 +1.5 728,212 - AO356_03285 0.70 +0.3 728,302 + +0.7 728,335 + +0.1 728,335 + -0.5 728,335 + +0.1 728,335 + -0.2 728,398 + +0.6 728,398 + +0.4 728,528 + -0.9 728,529 - -0.9 728,554 + +0.9 728,562 + -0.7 728,596 + +0.9 728,650 + AO356_03290 0.14 +0.3 728,651 - AO356_03290 0.14 +0.3 728,651 - AO356_03290 0.14 -0.3 728,651 - AO356_03290 0.14 +0.5 728,701 + AO356_03290 0.19 +0.3 728,701 + AO356_03290 0.19 -0.3 728,701 + AO356_03290 0.19 +0.3 728,701 + AO356_03290 0.19 +1.2 728,702 - AO356_03290 0.19 +0.1 728,824 + AO356_03290 0.31 +0.1 728,824 + AO356_03290 0.31 -1.3 728,824 + AO356_03290 0.31 +1.2 729,391 + AO356_03290 0.85 -1.3 729,391 + AO356_03290 0.85 -0.2 729,463 + +0.6 729,464 - +0.1 729,464 - +0.2 729,524 - +0.5 729,541 + +1.0 729,541 + +0.8 729,542 - +0.9 729,542 - +0.2 729,542 - -0.1 729,542 - +1.7 729,656 + +0.8 729,656 + +0.2 729,656 + +0.5 729,656 + -0.3 729,656 + +0.2 729,656 + +0.5 729,657 - -0.8 729,657 - -0.5 729,657 - -0.7 729,657 - +0.4 729,657 - -0.2 729,657 - -2.5 729,663 - -0.2 729,663 - -0.7 729,663 - +0.2 729,663 - -0.3 729,663 - +0.9 729,663 - +0.7 729,779 + AO356_03295 0.17 -0.2 729,779 + AO356_03295 0.17 +0.4 729,780 - AO356_03295 0.17 -0.9 729,881 + AO356_03295 0.31 +0.3 729,881 + AO356_03295 0.31 -0.0 729,881 + AO356_03295 0.31 +1.1 729,881 + AO356_03295 0.31 +1.1 729,882 - AO356_03295 0.32 -0.3 730,059 - AO356_03295 0.57 -0.2 730,274 + AO356_03295 0.88 +0.6 730,274 + AO356_03295 0.88 +0.2 730,275 - AO356_03295 0.88 -0.5 730,410 + -0.3 730,410 + +0.7 730,410 + +0.2 730,410 + -0.3 730,411 - +0.8 730,411 - +0.3
Or see this region's nucleotide sequence