Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01560 and AO356_01565 are separated by 186 nucleotidesAO356_01565 and AO356_01570 are separated by 151 nucleotidesAO356_01570 and AO356_01575 are separated by 654 nucleotides AO356_01560: AO356_01560 - LysR family transcriptional regulator, at 351,453 to 352,382 _01560 AO356_01565: AO356_01565 - MerR family transcriptional regulator, at 352,569 to 352,970 _01565 AO356_01570: AO356_01570 - hydroxymethylglutaryl-CoA lyase, at 353,122 to 354,021 _01570 AO356_01575: AO356_01575 - AMP-binding protein, at 354,676 to 356,373 _01575 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1 2at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.141 kb on - strand, within AO356_01560at 352.141 kb on - strand, within AO356_01560at 352.272 kb on + strand, within AO356_01560at 352.272 kb on + strand, within AO356_01560at 352.273 kb on - strand, within AO356_01560at 352.380 kb on + strandat 352.380 kb on + strandat 352.380 kb on + strandat 352.381 kb on - strandat 352.424 kb on - strandat 352.452 kb on - strandat 352.532 kb on + strandat 352.532 kb on + strandat 352.533 kb on - strandat 352.584 kb on + strandat 352.584 kb on + strandat 352.584 kb on + strandat 352.584 kb on + strandat 352.584 kb on + strandat 352.641 kb on + strand, within AO356_01565at 352.641 kb on + strand, within AO356_01565at 352.641 kb on + strand, within AO356_01565at 352.693 kb on - strand, within AO356_01565at 352.785 kb on + strand, within AO356_01565at 352.785 kb on + strand, within AO356_01565at 352.785 kb on + strand, within AO356_01565at 352.785 kb on + strand, within AO356_01565at 352.968 kb on + strandat 353.093 kb on + strandat 353.093 kb on + strandat 353.093 kb on + strandat 353.093 kb on + strandat 353.093 kb on + strandat 353.093 kb on + strandat 353.094 kb on - strandat 353.141 kb on + strandat 353.141 kb on + strandat 353.252 kb on - strand, within AO356_01570at 353.350 kb on + strand, within AO356_01570at 353.351 kb on - strand, within AO356_01570at 353.351 kb on - strand, within AO356_01570at 353.351 kb on - strand, within AO356_01570at 353.543 kb on - strand, within AO356_01570at 353.569 kb on + strand, within AO356_01570at 353.620 kb on + strand, within AO356_01570at 353.620 kb on + strand, within AO356_01570at 353.635 kb on + strand, within AO356_01570at 353.635 kb on + strand, within AO356_01570at 353.635 kb on + strand, within AO356_01570at 353.635 kb on + strand, within AO356_01570at 353.636 kb on - strand, within AO356_01570at 353.706 kb on - strand, within AO356_01570at 353.751 kb on + strand, within AO356_01570at 353.755 kb on + strand, within AO356_01570at 353.890 kb on + strand, within AO356_01570at 353.891 kb on - strand, within AO356_01570at 353.891 kb on - strand, within AO356_01570at 354.041 kb on + strandat 354.041 kb on + strandat 354.041 kb on + strandat 354.042 kb on - strandat 354.042 kb on - strandat 354.183 kb on + strandat 354.184 kb on - strandat 354.262 kb on - strandat 354.334 kb on + strandat 354.334 kb on + strandat 354.335 kb on - strandat 354.340 kb on + strandat 354.341 kb on - strandat 354.350 kb on + strandat 354.350 kb on + strandat 354.350 kb on + strandat 354.351 kb on - strandat 354.407 kb on - strandat 354.450 kb on + strandat 354.494 kb on + strandat 354.494 kb on + strandat 354.495 kb on - strandat 354.497 kb on + strandat 354.525 kb on - strandat 354.525 kb on - strandat 354.620 kb on + strandat 354.620 kb on + strandat 354.620 kb on + strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.621 kb on - strandat 354.631 kb on + strandat 354.632 kb on - strandat 354.632 kb on - strandat 354.668 kb on + strandat 354.668 kb on + strandat 354.890 kb on + strand, within AO356_01575at 354.972 kb on - strand, within AO356_01575at 354.972 kb on - strand, within AO356_01575

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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352,140 + AO356_01560 0.74 +0.4
352,140 + AO356_01560 0.74 -1.1
352,140 + AO356_01560 0.74 +0.5
352,140 + AO356_01560 0.74 +0.6
352,140 + AO356_01560 0.74 +0.5
352,141 - AO356_01560 0.74 -0.2
352,141 - AO356_01560 0.74 -0.3
352,272 + AO356_01560 0.88 -0.8
352,272 + AO356_01560 0.88 -0.1
352,273 - AO356_01560 0.88 -0.4
352,380 + +0.6
352,380 + +0.9
352,380 + -0.9
352,381 - -0.0
352,424 - +0.4
352,452 - +0.1
352,532 + +0.1
352,532 + -0.6
352,533 - -0.0
352,584 + -0.6
352,584 + +0.3
352,584 + -1.2
352,584 + +0.1
352,584 + -0.3
352,641 + AO356_01565 0.18 +0.7
352,641 + AO356_01565 0.18 +1.5
352,641 + AO356_01565 0.18 +0.1
352,693 - AO356_01565 0.31 -0.3
352,785 + AO356_01565 0.54 +1.8
352,785 + AO356_01565 0.54 -0.9
352,785 + AO356_01565 0.54 -0.7
352,785 + AO356_01565 0.54 -0.2
352,968 + -1.5
353,093 + +0.3
353,093 + -1.7
353,093 + +0.0
353,093 + -1.6
353,093 + +0.4
353,093 + -1.3
353,094 - -0.3
353,141 + +1.8
353,141 + +0.6
353,252 - AO356_01570 0.14 -1.3
353,350 + AO356_01570 0.25 -0.6
353,351 - AO356_01570 0.25 -1.1
353,351 - AO356_01570 0.25 -0.8
353,351 - AO356_01570 0.25 -0.2
353,543 - AO356_01570 0.47 -1.5
353,569 + AO356_01570 0.50 +0.5
353,620 + AO356_01570 0.55 -2.5
353,620 + AO356_01570 0.55 -0.9
353,635 + AO356_01570 0.57 -1.4
353,635 + AO356_01570 0.57 -1.5
353,635 + AO356_01570 0.57 +0.4
353,635 + AO356_01570 0.57 +0.5
353,636 - AO356_01570 0.57 -1.1
353,706 - AO356_01570 0.65 -0.0
353,751 + AO356_01570 0.70 -1.3
353,755 + AO356_01570 0.70 -2.0
353,890 + AO356_01570 0.85 +0.1
353,891 - AO356_01570 0.85 -0.8
353,891 - AO356_01570 0.85 -0.0
354,041 + +0.2
354,041 + -0.1
354,041 + -0.4
354,042 - +0.9
354,042 - +0.3
354,183 + -0.6
354,184 - +0.3
354,262 - +1.1
354,334 + -1.0
354,334 + +0.6
354,335 - +1.1
354,340 + -0.5
354,341 - +1.0
354,350 + +0.4
354,350 + -0.2
354,350 + -0.3
354,351 - +1.9
354,407 - -0.6
354,450 + -0.8
354,494 + -0.1
354,494 + +0.3
354,495 - -0.1
354,497 + +1.0
354,525 - +0.4
354,525 - +1.2
354,620 + +1.5
354,620 + -0.2
354,620 + -0.5
354,621 - -0.2
354,621 - -1.0
354,621 - -0.1
354,621 - +0.1
354,621 - -0.4
354,621 - -0.8
354,621 - -0.5
354,631 + -0.8
354,632 - -0.0
354,632 - -1.4
354,668 + -2.5
354,668 + -1.3
354,890 + AO356_01575 0.13 +1.1
354,972 - AO356_01575 0.17 +0.5
354,972 - AO356_01575 0.17 +0.4

Or see this region's nucleotide sequence