Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00985 and AO356_00990 are separated by 156 nucleotides AO356_00990 and AO356_00995 are separated by 247 nucleotides AO356_00995 and AO356_01000 are separated by 193 nucleotides AO356_01000 and AO356_01005 are separated by 286 nucleotides
AO356_00985: AO356_00985 - deoxyribonuclease, at 222,788 to 223,477
_00985
AO356_00990: AO356_00990 - penicillin-binding protein activator LpoB, at 223,634 to 223,999
_00990
AO356_00995: AO356_00995 - carbon storage regulator CsrA, at 224,247 to 224,441
_00995
AO356_01000: AO356_01000 - hypothetical protein, at 224,635 to 225,090
_01000
AO356_01005: AO356_01005 - cysteine--tRNA ligase, at 225,377 to 226,759
_01005
Position (kb) 224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.295 kb on + strand, within AO356_00985 at 223.295 kb on + strand, within AO356_00985 at 223.295 kb on + strand, within AO356_00985 at 223.301 kb on + strand, within AO356_00985 at 223.302 kb on - strand, within AO356_00985 at 223.317 kb on - strand, within AO356_00985 at 223.352 kb on + strand, within AO356_00985 at 223.352 kb on + strand, within AO356_00985 at 223.352 kb on + strand, within AO356_00985 at 223.352 kb on + strand, within AO356_00985 at 223.352 kb on + strand, within AO356_00985 at 223.373 kb on + strand, within AO356_00985 at 223.635 kb on + strand at 223.636 kb on - strand at 223.651 kb on - strand at 223.787 kb on + strand, within AO356_00990 at 223.787 kb on + strand, within AO356_00990 at 223.788 kb on - strand, within AO356_00990 at 223.788 kb on - strand, within AO356_00990 at 223.788 kb on - strand, within AO356_00990 at 223.993 kb on + strand at 223.993 kb on + strand at 223.994 kb on - strand at 224.034 kb on + strand at 224.035 kb on - strand at 224.035 kb on - strand at 224.103 kb on + strand at 224.103 kb on + strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.104 kb on - strand at 224.105 kb on + strand at 224.123 kb on + strand at 224.123 kb on + strand at 224.123 kb on + strand at 224.123 kb on + strand at 224.124 kb on - strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.170 kb on + strand at 224.171 kb on - strand at 224.171 kb on - strand at 224.171 kb on - strand at 224.171 kb on - strand at 224.176 kb on + strand at 224.177 kb on - strand at 224.177 kb on - strand at 224.177 kb on - strand at 224.181 kb on + strand at 224.181 kb on + strand at 224.181 kb on + strand at 224.182 kb on - strand at 224.182 kb on - strand at 224.183 kb on + strand at 224.183 kb on + strand at 224.183 kb on + strand at 224.183 kb on + strand at 224.224 kb on - strand at 224.225 kb on + strand at 224.255 kb on - strand at 224.282 kb on - strand, within AO356_00995 at 224.285 kb on + strand, within AO356_00995 at 224.285 kb on + strand, within AO356_00995 at 224.286 kb on - strand, within AO356_00995 at 224.335 kb on + strand, within AO356_00995 at 224.335 kb on + strand, within AO356_00995 at 224.388 kb on + strand, within AO356_00995 at 224.388 kb on + strand, within AO356_00995 at 224.388 kb on + strand, within AO356_00995 at 224.388 kb on + strand, within AO356_00995 at 224.388 kb on + strand, within AO356_00995 at 224.560 kb on + strand at 224.560 kb on + strand at 224.561 kb on - strand at 224.561 kb on - strand at 224.563 kb on + strand at 224.563 kb on + strand at 224.604 kb on + strand at 224.605 kb on - strand at 224.605 kb on - strand at 224.693 kb on - strand, within AO356_01000 at 224.809 kb on + strand, within AO356_01000 at 224.867 kb on + strand, within AO356_01000 at 224.867 kb on + strand, within AO356_01000 at 224.867 kb on + strand, within AO356_01000 at 224.867 kb on + strand, within AO356_01000 at 224.871 kb on - strand, within AO356_01000 at 224.871 kb on - strand, within AO356_01000 at 224.871 kb on - strand, within AO356_01000 at 225.132 kb on + strand at 225.132 kb on + strand at 225.132 kb on + strand at 225.132 kb on + strand at 225.133 kb on - strand at 225.135 kb on + strand at 225.136 kb on - strand at 225.136 kb on - strand at 225.193 kb on + strand at 225.193 kb on + strand at 225.193 kb on + strand at 225.193 kb on + strand at 225.194 kb on - strand at 225.194 kb on - strand at 225.194 kb on - strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.363 kb on - strand at 225.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 223,295 + AO356_00985 0.73 -0.1 223,295 + AO356_00985 0.73 +0.1 223,295 + AO356_00985 0.73 +1.1 223,301 + AO356_00985 0.74 +0.8 223,302 - AO356_00985 0.74 -0.1 223,317 - AO356_00985 0.77 +0.9 223,352 + AO356_00985 0.82 +1.4 223,352 + AO356_00985 0.82 +0.4 223,352 + AO356_00985 0.82 -0.4 223,352 + AO356_00985 0.82 -0.1 223,352 + AO356_00985 0.82 +1.0 223,373 + AO356_00985 0.85 +1.1 223,635 + +0.1 223,636 - -0.0 223,651 - -0.8 223,787 + AO356_00990 0.42 -0.8 223,787 + AO356_00990 0.42 +2.0 223,788 - AO356_00990 0.42 +0.7 223,788 - AO356_00990 0.42 +0.0 223,788 - AO356_00990 0.42 -0.6 223,993 + +0.4 223,993 + +1.5 223,994 - -0.6 224,034 + -0.3 224,035 - -1.4 224,035 - -2.3 224,103 + +0.6 224,103 + +0.9 224,104 - -0.5 224,104 - -0.8 224,104 - -0.1 224,104 - +0.2 224,104 - -0.5 224,104 - -0.5 224,104 - -0.3 224,105 + +0.3 224,123 + +0.7 224,123 + +1.0 224,123 + -0.2 224,123 + +0.5 224,124 - +0.8 224,170 + +0.1 224,170 + -0.3 224,170 + +0.7 224,170 + +0.4 224,170 + +0.9 224,170 + -0.2 224,170 + +0.1 224,171 - +0.0 224,171 - -0.1 224,171 - -1.0 224,171 - -0.2 224,176 + +1.1 224,177 - -0.7 224,177 - -0.5 224,177 - -0.7 224,181 + -1.8 224,181 + +0.2 224,181 + +0.8 224,182 - +0.3 224,182 - +1.2 224,183 + -0.1 224,183 + +0.1 224,183 + -0.4 224,183 + +0.6 224,224 - -0.4 224,225 + -0.6 224,255 - -2.0 224,282 - AO356_00995 0.18 -1.8 224,285 + AO356_00995 0.19 +1.0 224,285 + AO356_00995 0.19 +0.3 224,286 - AO356_00995 0.20 -0.7 224,335 + AO356_00995 0.45 -1.5 224,335 + AO356_00995 0.45 -0.9 224,388 + AO356_00995 0.72 -2.3 224,388 + AO356_00995 0.72 -0.5 224,388 + AO356_00995 0.72 -0.3 224,388 + AO356_00995 0.72 +0.0 224,388 + AO356_00995 0.72 -0.2 224,560 + -1.8 224,560 + +0.2 224,561 - -0.6 224,561 - +0.1 224,563 + -0.7 224,563 + -0.3 224,604 + +0.6 224,605 - -0.7 224,605 - +0.0 224,693 - AO356_01000 0.13 -1.2 224,809 + AO356_01000 0.38 -0.4 224,867 + AO356_01000 0.51 -0.1 224,867 + AO356_01000 0.51 +0.1 224,867 + AO356_01000 0.51 -1.7 224,867 + AO356_01000 0.51 -1.1 224,871 - AO356_01000 0.52 -0.6 224,871 - AO356_01000 0.52 +0.5 224,871 - AO356_01000 0.52 -0.4 225,132 + -0.8 225,132 + -0.9 225,132 + -0.2 225,132 + +0.3 225,133 - -0.1 225,135 + -1.0 225,136 - +0.3 225,136 - -1.4 225,193 + -0.7 225,193 + -1.0 225,193 + -0.4 225,193 + -0.1 225,194 - +0.1 225,194 - -0.8 225,194 - +0.1 225,362 + -0.6 225,362 + +0.0 225,363 - -0.4 225,363 - -0.0
Or see this region's nucleotide sequence