Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3098 and Shew_3099 are separated by 131 nucleotides Shew_3099 and Shew_3100 are separated by 1 nucleotides Shew_3100 and Shew_3101 are separated by 190 nucleotides
Shew_3098: Shew_3098 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,679,301 to 3,680,341
_3098
Shew_3099: Shew_3099 - TetR family transcriptional regulator (RefSeq), at 3,680,473 to 3,681,051
_3099
Shew_3100: Shew_3100 - UspA domain-containing protein (RefSeq), at 3,681,053 to 3,681,496
_3100
Shew_3101: Shew_3101 - UspA domain-containing protein (RefSeq), at 3,681,687 to 3,682,118
_3101
Position (kb)
3680
3681
3682 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3679.680 kb on - strand, within Shew_3098 at 3679.892 kb on - strand, within Shew_3098 at 3679.926 kb on - strand, within Shew_3098 at 3680.115 kb on - strand, within Shew_3098 at 3680.141 kb on + strand, within Shew_3098 at 3680.149 kb on - strand, within Shew_3098 at 3680.149 kb on - strand, within Shew_3098 at 3680.918 kb on - strand, within Shew_3099 at 3681.019 kb on - strand at 3681.074 kb on + strand at 3681.105 kb on - strand, within Shew_3100 at 3681.513 kb on - strand at 3681.955 kb on - strand, within Shew_3101 at 3681.985 kb on + strand, within Shew_3101 at 3682.051 kb on + strand, within Shew_3101
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 3,679,680 - Shew_3098 0.36 +0.1 3,679,892 - Shew_3098 0.57 -0.2 3,679,926 - Shew_3098 0.60 -0.1 3,680,115 - Shew_3098 0.78 +0.7 3,680,141 + Shew_3098 0.81 +0.5 3,680,149 - Shew_3098 0.81 -0.1 3,680,149 - Shew_3098 0.81 +0.1 3,680,918 - Shew_3099 0.77 -4.2 3,681,019 - -4.2 3,681,074 + +0.1 3,681,105 - Shew_3100 0.12 -1.5 3,681,513 - -0.0 3,681,955 - Shew_3101 0.62 +0.1 3,681,985 + Shew_3101 0.69 -0.0 3,682,051 + Shew_3101 0.84 +0.5
Or see this region's nucleotide sequence