Strain Fitness in Shewanella loihica PV-4 around Shew_2715

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2714 and Shew_2715 are separated by 440 nucleotidesShew_2715 and Shew_2716 are separated by 527 nucleotides Shew_2714: Shew_2714 - hypothetical protein (RefSeq), at 3,212,018 to 3,212,773 _2714 Shew_2715: Shew_2715 - hypothetical protein (RefSeq), at 3,213,214 to 3,213,945 _2715 Shew_2716: Shew_2716 - peptidase S41 (RefSeq), at 3,214,473 to 3,216,041 _2716 Position (kb) 3213 3214Strain fitness (log2 ratio) -1 0 1at 3212.314 kb on + strand, within Shew_2714at 3212.316 kb on + strand, within Shew_2714at 3212.553 kb on - strand, within Shew_2714at 3212.553 kb on - strand, within Shew_2714at 3212.832 kb on + strandat 3213.032 kb on + strandat 3213.272 kb on + strandat 3213.280 kb on - strandat 3213.441 kb on - strand, within Shew_2715at 3214.694 kb on + strand, within Shew_2716at 3214.828 kb on - strand, within Shew_2716

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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3,212,314 + Shew_2714 0.39 +0.0
3,212,316 + Shew_2714 0.39 +0.1
3,212,553 - Shew_2714 0.71 +0.4
3,212,553 - Shew_2714 0.71 +0.1
3,212,832 + -0.0
3,213,032 + +0.3
3,213,272 + +0.4
3,213,280 - -0.2
3,213,441 - Shew_2715 0.31 -1.2
3,214,694 + Shew_2716 0.14 -0.1
3,214,828 - Shew_2716 0.23 +0.0

Or see this region's nucleotide sequence