Strain Fitness in Shewanella loihica PV-4 around Shew_2712

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2711 and Shew_2712 are separated by 91 nucleotidesShew_2712 and Shew_2713 are separated by 184 nucleotides Shew_2711: Shew_2711 - AraC family transcriptional regulator (RefSeq), at 3,208,607 to 3,209,395 _2711 Shew_2712: Shew_2712 - peptidase S15 (RefSeq), at 3,209,487 to 3,210,416 _2712 Shew_2713: Shew_2713 - metal dependent phosphohydrolase (RefSeq), at 3,210,601 to 3,211,713 _2713 Position (kb) 3209 3210 3211Strain fitness (log2 ratio) -1 0 1at 3208.818 kb on - strand, within Shew_2711at 3209.111 kb on - strand, within Shew_2711at 3209.202 kb on - strand, within Shew_2711at 3209.273 kb on - strand, within Shew_2711at 3209.611 kb on - strand, within Shew_2712at 3209.836 kb on - strand, within Shew_2712at 3209.974 kb on + strand, within Shew_2712at 3210.024 kb on - strand, within Shew_2712at 3210.108 kb on + strand, within Shew_2712at 3210.215 kb on + strand, within Shew_2712at 3210.584 kb on + strandat 3210.584 kb on + strandat 3210.592 kb on - strandat 3210.611 kb on - strandat 3210.628 kb on - strandat 3210.668 kb on + strandat 3210.840 kb on + strand, within Shew_2713at 3210.848 kb on - strand, within Shew_2713at 3210.848 kb on - strand, within Shew_2713at 3210.926 kb on + strand, within Shew_2713at 3211.089 kb on + strand, within Shew_2713at 3211.314 kb on + strand, within Shew_2713at 3211.316 kb on + strand, within Shew_2713at 3211.316 kb on + strand, within Shew_2713at 3211.324 kb on - strand, within Shew_2713at 3211.324 kb on - strand, within Shew_2713at 3211.324 kb on - strand, within Shew_2713at 3211.324 kb on - strand, within Shew_2713at 3211.411 kb on - strand, within Shew_2713

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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3,208,818 - Shew_2711 0.27 +0.1
3,209,111 - Shew_2711 0.64 +1.1
3,209,202 - Shew_2711 0.75 +0.1
3,209,273 - Shew_2711 0.84 -0.8
3,209,611 - Shew_2712 0.13 +0.2
3,209,836 - Shew_2712 0.38 +0.4
3,209,974 + Shew_2712 0.52 +0.5
3,210,024 - Shew_2712 0.58 +0.1
3,210,108 + Shew_2712 0.67 +0.3
3,210,215 + Shew_2712 0.78 +0.2
3,210,584 + +0.5
3,210,584 + +0.1
3,210,592 - +0.3
3,210,611 - -0.4
3,210,628 - +0.2
3,210,668 + +0.1
3,210,840 + Shew_2713 0.21 -0.7
3,210,848 - Shew_2713 0.22 -0.6
3,210,848 - Shew_2713 0.22 -0.0
3,210,926 + Shew_2713 0.29 +0.1
3,211,089 + Shew_2713 0.44 -0.5
3,211,314 + Shew_2713 0.64 +0.2
3,211,316 + Shew_2713 0.64 -0.8
3,211,316 + Shew_2713 0.64 +0.3
3,211,324 - Shew_2713 0.65 +0.4
3,211,324 - Shew_2713 0.65 +0.2
3,211,324 - Shew_2713 0.65 -0.6
3,211,324 - Shew_2713 0.65 -0.4
3,211,411 - Shew_2713 0.73 +0.0

Or see this region's nucleotide sequence