Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2247 and Shew_2248 are separated by 0 nucleotides Shew_2248 and Shew_2249 are separated by 163 nucleotides Shew_2249 and Shew_2250 overlap by 4 nucleotides
Shew_2247: Shew_2247 - putative transcriptional regulator (RefSeq), at 2,626,643 to 2,627,275
_2247
Shew_2248: Shew_2248 - chromosome segregation and condensation protein ScpA (RefSeq), at 2,627,276 to 2,628,064
_2248
Shew_2249: Shew_2249 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 2,628,228 to 2,628,848
_2249
Shew_2250: Shew_2250 - phosphotransferase domain-containing protein (RefSeq), at 2,628,845 to 2,629,705
_2250
Position (kb)
2628
2629 Strain fitness (log2 ratio)
-2
-1
0
1 at 2627.504 kb on - strand, within Shew_2248 at 2627.678 kb on - strand, within Shew_2248 at 2627.688 kb on + strand, within Shew_2248 at 2627.696 kb on - strand, within Shew_2248 at 2628.562 kb on + strand, within Shew_2249 at 2628.576 kb on - strand, within Shew_2249 at 2628.756 kb on + strand, within Shew_2249 at 2629.102 kb on + strand, within Shew_2250 at 2629.297 kb on + strand, within Shew_2250 at 2629.515 kb on + strand, within Shew_2250 at 2629.569 kb on + strand, within Shew_2250 at 2629.613 kb on - strand, within Shew_2250 at 2629.613 kb on - strand, within Shew_2250 at 2629.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 2,627,504 - Shew_2248 0.29 -0.5 2,627,678 - Shew_2248 0.51 +1.3 2,627,688 + Shew_2248 0.52 -1.7 2,627,696 - Shew_2248 0.53 -0.7 2,628,562 + Shew_2249 0.54 -0.8 2,628,576 - Shew_2249 0.56 -1.1 2,628,756 + Shew_2249 0.85 -0.6 2,629,102 + Shew_2250 0.30 -1.8 2,629,297 + Shew_2250 0.52 -2.2 2,629,515 + Shew_2250 0.78 -1.7 2,629,569 + Shew_2250 0.84 -1.0 2,629,613 - Shew_2250 0.89 -0.9 2,629,613 - Shew_2250 0.89 -0.7 2,629,777 + -0.2
Or see this region's nucleotide sequence