Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1812 and Shew_1813 overlap by 8 nucleotides Shew_1813 and Shew_1814 are separated by 1 nucleotides Shew_1814 and Shew_1815 are separated by 24 nucleotides
Shew_1812: Shew_1812 - 23S rRNA m(2)G2445 methyltransferase (RefSeq), at 2,083,035 to 2,085,170
_1812
Shew_1813: Shew_1813 - glutaredoxin 2 (RefSeq), at 2,085,163 to 2,085,399
_1813
Shew_1814: Shew_1814 - ABC transporter ATPase component (RefSeq), at 2,085,401 to 2,087,320
_1814
Shew_1815: Shew_1815 - hypothetical protein (RefSeq), at 2,087,345 to 2,089,198
_1815
Position (kb)
2085
2086
2087
2088 Strain fitness (log2 ratio)
-1
0
1 at 2084.521 kb on + strand, within Shew_1812 at 2084.588 kb on + strand, within Shew_1812 at 2084.730 kb on + strand, within Shew_1812 at 2084.740 kb on + strand, within Shew_1812 at 2084.776 kb on - strand, within Shew_1812 at 2084.824 kb on - strand, within Shew_1812 at 2084.892 kb on - strand, within Shew_1812 at 2085.680 kb on - strand, within Shew_1814 at 2086.158 kb on + strand, within Shew_1814 at 2086.158 kb on + strand, within Shew_1814
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 2,084,521 + Shew_1812 0.70 -0.1 2,084,588 + Shew_1812 0.73 +0.1 2,084,730 + Shew_1812 0.79 +0.2 2,084,740 + Shew_1812 0.80 -0.6 2,084,776 - Shew_1812 0.82 -0.9 2,084,824 - Shew_1812 0.84 -0.6 2,084,892 - Shew_1812 0.87 -1.0 2,085,680 - Shew_1814 0.15 -1.5 2,086,158 + Shew_1814 0.39 -1.0 2,086,158 + Shew_1814 0.39 -1.3
Or see this region's nucleotide sequence