Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1729 and Shew_1730 are separated by 215 nucleotides Shew_1730 and Shew_1731 are separated by 262 nucleotides Shew_1731 and Shew_1732 are separated by 30 nucleotides
Shew_1729: Shew_1729 - curli production assembly/transport component CsgG (RefSeq), at 1,981,396 to 1,982,244
_1729
Shew_1730: Shew_1730 - hypothetical protein (RefSeq), at 1,982,460 to 1,983,026
_1730
Shew_1731: Shew_1731 - histidine triad (HIT) protein (RefSeq), at 1,983,289 to 1,983,639
_1731
Shew_1732: Shew_1732 - hypothetical protein (RefSeq), at 1,983,670 to 1,984,167
_1732
Position (kb) 1982
1983
1984 Strain fitness (log2 ratio) -1
0
1 at 1981.632 kb on + strand, within Shew_1729 at 1981.958 kb on + strand, within Shew_1729 at 1982.171 kb on + strand at 1982.956 kb on - strand, within Shew_1730 at 1983.389 kb on - strand, within Shew_1731 at 1983.660 kb on + strand at 1983.668 kb on - strand at 1983.806 kb on + strand, within Shew_1732 at 1983.991 kb on + strand, within Shew_1732
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,981,632 + Shew_1729 0.28 +0.1 1,981,958 + Shew_1729 0.66 -0.4 1,982,171 + -0.4 1,982,956 - Shew_1730 0.87 -1.1 1,983,389 - Shew_1731 0.28 -1.2 1,983,660 + +0.1 1,983,668 - +0.1 1,983,806 + Shew_1732 0.27 +0.4 1,983,991 + Shew_1732 0.64 -1.3
Or see this region's nucleotide sequence