Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1458 and Shew_1459 are separated by 398 nucleotides Shew_1459 and Shew_1460 are separated by 84 nucleotides Shew_1460 and Shew_1461 are separated by 191 nucleotides
Shew_1458: Shew_1458 - serine/threonine transporter SstT (RefSeq), at 1,680,465 to 1,681,688
_1458
Shew_1459: Shew_1459 - hypothetical protein (RefSeq), at 1,682,087 to 1,682,491
_1459
Shew_1460: Shew_1460 - pseudouridine synthase (RefSeq), at 1,682,576 to 1,683,229
_1460
Shew_1461: Shew_1461 - zinc carboxypeptidase-related protein (RefSeq), at 1,683,421 to 1,684,398
_1461
Position (kb) 1682
1683 Strain fitness (log2 ratio) -1
0
1 at 1681.129 kb on + strand, within Shew_1458 at 1681.129 kb on + strand, within Shew_1458 at 1681.263 kb on + strand, within Shew_1458 at 1681.357 kb on - strand, within Shew_1458 at 1681.614 kb on + strand at 1681.847 kb on - strand at 1681.958 kb on - strand at 1682.206 kb on + strand, within Shew_1459 at 1682.244 kb on - strand, within Shew_1459 at 1683.194 kb on + strand at 1683.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,681,129 + Shew_1458 0.54 -0.3 1,681,129 + Shew_1458 0.54 -0.1 1,681,263 + Shew_1458 0.65 +0.1 1,681,357 - Shew_1458 0.73 +0.0 1,681,614 + -0.4 1,681,847 - -0.4 1,681,958 - -0.0 1,682,206 + Shew_1459 0.29 -0.9 1,682,244 - Shew_1459 0.39 -0.6 1,683,194 + -0.6 1,683,301 + -0.1
Or see this region's nucleotide sequence