Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0735 and Shew_0736 are separated by 104 nucleotides Shew_0736 and Shew_0737 are separated by 123 nucleotides
Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327
_0735
Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472
_0736
Shew_0737: Shew_0737 - MarR family transcriptional regulator (RefSeq), at 838,596 to 839,564
_0737
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1 at 836.608 kb on - strand, within Shew_0735 at 836.762 kb on + strand, within Shew_0735 at 837.045 kb on - strand, within Shew_0735 at 837.097 kb on - strand, within Shew_0735 at 837.591 kb on + strand, within Shew_0736 at 837.967 kb on + strand, within Shew_0736 at 838.136 kb on - strand, within Shew_0736 at 838.444 kb on - strand at 838.444 kb on - strand at 838.457 kb on + strand at 838.465 kb on - strand at 838.465 kb on - strand at 838.495 kb on + strand at 838.799 kb on - strand, within Shew_0737 at 838.911 kb on + strand, within Shew_0737 at 839.083 kb on + strand, within Shew_0737 at 839.086 kb on - strand, within Shew_0737 at 839.096 kb on - strand, within Shew_0737 at 839.144 kb on + strand, within Shew_0737 at 839.157 kb on - strand, within Shew_0737 at 839.228 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 836,608 - Shew_0735 0.41 +0.5 836,762 + Shew_0735 0.53 +0.7 837,045 - Shew_0735 0.77 +0.9 837,097 - Shew_0735 0.81 -0.1 837,591 + Shew_0736 0.15 -0.7 837,967 + Shew_0736 0.51 -0.2 838,136 - Shew_0736 0.68 -0.2 838,444 - +0.1 838,444 - -0.4 838,457 + -0.3 838,465 - -1.3 838,465 - -0.3 838,495 + +0.5 838,799 - Shew_0737 0.21 +0.2 838,911 + Shew_0737 0.33 +0.1 839,083 + Shew_0737 0.50 +0.7 839,086 - Shew_0737 0.51 -0.1 839,096 - Shew_0737 0.52 +0.3 839,144 + Shew_0737 0.57 +0.3 839,157 - Shew_0737 0.58 +0.2 839,228 - Shew_0737 0.65 +0.5 839,445 - Shew_0737 0.88 +0.5 839,445 - Shew_0737 0.88 +0.4
Or see this region's nucleotide sequence