Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0532 and Shew_0533 are separated by 132 nucleotides Shew_0533 and Shew_0534 are separated by 202 nucleotides
Shew_0532: Shew_0532 - peptidase M28 (RefSeq), at 602,600 to 603,628
_0532
Shew_0533: Shew_0533 - excinuclease ABC, A subunit (RefSeq), at 603,761 to 606,586
_0533
Shew_0534: Shew_0534 - major facilitator transporter (RefSeq), at 606,789 to 608,156
_0534
Position (kb) 603
604
605
606
607 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 602.879 kb on - strand, within Shew_0532 at 602.879 kb on - strand, within Shew_0532 at 602.982 kb on + strand, within Shew_0532 at 602.982 kb on + strand, within Shew_0532 at 602.990 kb on - strand, within Shew_0532 at 602.990 kb on - strand, within Shew_0532 at 603.018 kb on + strand, within Shew_0532 at 603.112 kb on - strand, within Shew_0532 at 603.523 kb on + strand, within Shew_0532 at 603.528 kb on + strand at 603.528 kb on + strand at 603.711 kb on - strand at 604.062 kb on + strand, within Shew_0533 at 604.080 kb on - strand, within Shew_0533 at 604.462 kb on + strand, within Shew_0533 at 604.643 kb on - strand, within Shew_0533 at 604.643 kb on - strand, within Shew_0533 at 604.725 kb on - strand, within Shew_0533 at 604.817 kb on + strand, within Shew_0533 at 604.894 kb on + strand, within Shew_0533 at 604.902 kb on - strand, within Shew_0533 at 605.096 kb on + strand, within Shew_0533 at 605.152 kb on + strand, within Shew_0533 at 605.308 kb on + strand, within Shew_0533 at 605.308 kb on + strand, within Shew_0533 at 605.415 kb on + strand, within Shew_0533 at 605.444 kb on + strand, within Shew_0533 at 605.543 kb on + strand, within Shew_0533 at 605.543 kb on + strand, within Shew_0533 at 605.609 kb on - strand, within Shew_0533 at 605.738 kb on + strand, within Shew_0533 at 605.962 kb on + strand, within Shew_0533 at 606.076 kb on - strand, within Shew_0533 at 606.094 kb on - strand, within Shew_0533 at 606.370 kb on + strand at 606.442 kb on - strand at 606.466 kb on - strand at 606.493 kb on + strand at 606.571 kb on + strand at 606.593 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.814 kb on - strand at 606.814 kb on - strand at 607.367 kb on - strand, within Shew_0534
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 602,879 - Shew_0532 0.27 -0.5 602,879 - Shew_0532 0.27 -0.3 602,982 + Shew_0532 0.37 -0.1 602,982 + Shew_0532 0.37 +0.2 602,990 - Shew_0532 0.38 +0.1 602,990 - Shew_0532 0.38 +1.4 603,018 + Shew_0532 0.41 +0.1 603,112 - Shew_0532 0.50 -0.0 603,523 + Shew_0532 0.90 -0.5 603,528 + -0.1 603,528 + -0.4 603,711 - -0.4 604,062 + Shew_0533 0.11 -1.9 604,080 - Shew_0533 0.11 -2.0 604,462 + Shew_0533 0.25 -4.2 604,643 - Shew_0533 0.31 -2.1 604,643 - Shew_0533 0.31 -2.2 604,725 - Shew_0533 0.34 -2.3 604,817 + Shew_0533 0.37 -1.9 604,894 + Shew_0533 0.40 -2.1 604,902 - Shew_0533 0.40 -2.5 605,096 + Shew_0533 0.47 -2.4 605,152 + Shew_0533 0.49 -1.5 605,308 + Shew_0533 0.55 -2.3 605,308 + Shew_0533 0.55 -2.0 605,415 + Shew_0533 0.59 -2.0 605,444 + Shew_0533 0.60 -2.2 605,543 + Shew_0533 0.63 -2.5 605,543 + Shew_0533 0.63 -2.9 605,609 - Shew_0533 0.65 -2.1 605,738 + Shew_0533 0.70 -2.4 605,962 + Shew_0533 0.78 -2.1 606,076 - Shew_0533 0.82 -1.9 606,094 - Shew_0533 0.83 -2.2 606,370 + -1.5 606,442 - -2.0 606,466 - -2.1 606,493 + -1.7 606,571 + -3.0 606,593 + -1.8 606,806 + -2.5 606,806 + -2.5 606,806 + -4.8 606,806 + -3.9 606,806 + -4.3 606,806 + -4.1 606,814 - -4.0 606,814 - -1.5 607,367 - Shew_0534 0.42 -2.7
Or see this region's nucleotide sequence