Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0280 and Shew_0281 are separated by 193 nucleotides Shew_0281 and Shew_0282 are separated by 24 nucleotides
Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150
_0280
Shew_0281: Shew_0281 - phospholipid/glycerol acyltransferase (RefSeq), at 298,344 to 299,291
_0281
Shew_0282: Shew_0282 - phospholipid/glycerol acyltransferase (RefSeq), at 299,316 to 300,200
_0282
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1 at 297.446 kb on + strand at 297.454 kb on - strand at 297.752 kb on - strand, within Shew_0280 at 297.875 kb on + strand, within Shew_0280 at 297.893 kb on - strand, within Shew_0280 at 298.049 kb on - strand, within Shew_0280 at 298.618 kb on - strand, within Shew_0281 at 298.697 kb on + strand, within Shew_0281 at 298.767 kb on + strand, within Shew_0281 at 298.777 kb on + strand, within Shew_0281 at 298.777 kb on + strand, within Shew_0281 at 298.855 kb on + strand, within Shew_0281 at 298.978 kb on - strand, within Shew_0281 at 299.205 kb on + strand at 299.260 kb on + strand at 299.312 kb on - strand at 299.604 kb on - strand, within Shew_0282 at 299.796 kb on + strand, within Shew_0282 at 299.825 kb on - strand, within Shew_0282 at 300.258 kb on + strand at 300.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 297,446 + -0.4 297,454 - +0.0 297,752 - Shew_0280 0.43 +0.5 297,875 + Shew_0280 0.61 -0.2 297,893 - Shew_0280 0.63 -0.1 298,049 - Shew_0280 0.85 +0.5 298,618 - Shew_0281 0.29 +1.0 298,697 + Shew_0281 0.37 +1.1 298,767 + Shew_0281 0.45 +1.0 298,777 + Shew_0281 0.46 +1.0 298,777 + Shew_0281 0.46 +1.6 298,855 + Shew_0281 0.54 +0.7 298,978 - Shew_0281 0.67 +0.7 299,205 + +1.1 299,260 + +0.6 299,312 - +0.9 299,604 - Shew_0282 0.33 -0.2 299,796 + Shew_0282 0.54 +0.9 299,825 - Shew_0282 0.58 +0.5 300,258 + +0.3 300,289 - -0.1
Or see this region's nucleotide sequence