Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0139 and Shew_0140 are separated by 68 nucleotides Shew_0140 and Shew_R0001 are separated by 631 nucleotides
Shew_0139: Shew_0139 - glutamate racemase (RefSeq), at 149,128 to 149,928
_0139
Shew_0140: Shew_0140 - RNP-1-like RNA-binding protein (RefSeq), at 149,997 to 150,455
_0140
Shew_R0001: Shew_R0001 - 16S ribosomal RNA (RefSeq), at 151,087 to 152,641
_R0001
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 149.887 kb on + strand at 149.887 kb on + strand at 150.053 kb on + strand, within Shew_0140 at 150.053 kb on + strand, within Shew_0140 at 150.061 kb on - strand, within Shew_0140 at 150.135 kb on + strand, within Shew_0140 at 150.201 kb on - strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.246 kb on - strand, within Shew_0140 at 150.278 kb on + strand, within Shew_0140 at 150.280 kb on + strand, within Shew_0140 at 150.288 kb on - strand, within Shew_0140 at 150.318 kb on - strand, within Shew_0140 at 150.385 kb on + strand, within Shew_0140 at 150.393 kb on - strand, within Shew_0140 at 150.393 kb on - strand, within Shew_0140
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 149,887 + -0.2 149,887 + -0.0 150,053 + Shew_0140 0.12 -1.6 150,053 + Shew_0140 0.12 -1.5 150,061 - Shew_0140 0.14 -1.6 150,135 + Shew_0140 0.30 -1.6 150,201 - Shew_0140 0.44 -0.9 150,238 + Shew_0140 0.53 -1.9 150,238 + Shew_0140 0.53 -1.0 150,238 + Shew_0140 0.53 -1.4 150,238 + Shew_0140 0.53 -0.8 150,238 + Shew_0140 0.53 -1.3 150,238 + Shew_0140 0.53 -1.6 150,246 - Shew_0140 0.54 -1.5 150,278 + Shew_0140 0.61 -1.9 150,280 + Shew_0140 0.62 -1.2 150,288 - Shew_0140 0.63 -1.7 150,318 - Shew_0140 0.70 -1.5 150,385 + Shew_0140 0.85 -1.5 150,393 - Shew_0140 0.86 -1.4 150,393 - Shew_0140 0.86 -2.1
Or see this region's nucleotide sequence