Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0125 and Shew_0126 are separated by 398 nucleotides Shew_0126 and Shew_0127 overlap by 4 nucleotides Shew_0127 and Shew_0128 are separated by 118 nucleotides Shew_0128 and nudE are separated by 97 nucleotides
Shew_0125: Shew_0125 - cytochrome c oxidase, subunit II (RefSeq), at 135,053 to 136,618
_0125
Shew_0126: Shew_0126 - hypothetical protein (RefSeq), at 137,017 to 137,526
_0126
Shew_0127: Shew_0127 - LexA repressor (RefSeq), at 137,523 to 138,140
_0127
Shew_0128: Shew_0128 - HAD family hydrolase (RefSeq), at 138,259 to 138,933
_0128
Shew_0129: nudE - ADP-ribose diphosphatase NudE (RefSeq), at 139,031 to 139,576
nudE
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 136.668 kb on - strand at 137.151 kb on + strand, within Shew_0126 at 137.379 kb on + strand, within Shew_0126 at 137.415 kb on + strand, within Shew_0126 at 137.423 kb on - strand, within Shew_0126 at 137.551 kb on + strand at 137.691 kb on + strand, within Shew_0127 at 137.699 kb on - strand, within Shew_0127 at 137.822 kb on + strand, within Shew_0127 at 137.833 kb on + strand, within Shew_0127 at 137.947 kb on - strand, within Shew_0127 at 138.203 kb on - strand at 138.265 kb on - strand at 138.266 kb on + strand at 138.274 kb on - strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.276 kb on + strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.284 kb on - strand at 138.660 kb on - strand, within Shew_0128 at 138.660 kb on - strand, within Shew_0128 at 138.829 kb on + strand, within Shew_0128 at 138.843 kb on + strand, within Shew_0128 at 139.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 136,668 - +0.2 137,151 + Shew_0126 0.26 -0.0 137,379 + Shew_0126 0.71 +0.1 137,415 + Shew_0126 0.78 -0.4 137,423 - Shew_0126 0.80 -0.5 137,551 + -3.4 137,691 + Shew_0127 0.27 -1.5 137,699 - Shew_0127 0.28 -2.9 137,822 + Shew_0127 0.48 -0.1 137,833 + Shew_0127 0.50 -2.3 137,947 - Shew_0127 0.69 -2.0 138,203 - -0.0 138,265 - -0.4 138,266 + +0.3 138,274 - -0.3 138,276 + +0.1 138,276 + -1.1 138,276 + -0.4 138,276 + +0.2 138,276 + -1.3 138,276 + +0.1 138,276 + -0.2 138,276 + -0.4 138,276 + -0.2 138,276 + +0.2 138,284 - -0.6 138,284 - -0.1 138,284 - +0.5 138,284 - -0.4 138,284 - -0.3 138,284 - -0.6 138,284 - -0.0 138,284 - -0.4 138,284 - +0.2 138,660 - Shew_0128 0.59 +0.1 138,660 - Shew_0128 0.59 -0.1 138,829 + Shew_0128 0.84 +0.0 138,843 + Shew_0128 0.87 -0.1 139,081 - -0.3
Or see this region's nucleotide sequence